PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019157591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 117aa MW: 13548.6 Da PI: 10.699 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.2 | 1.4e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s+r+ ++ kR+ g+ KK +EL vLCda++a+ii+ss XP_019157591.1 11 IVNQSKRKASYQKRKRGVVKKHNELTVLCDADAAMIIYSS 50 78************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
MARRRLRFAY IVNQSKRKAS YQKRKRGVVK KHNELTVLCD ADAAMIIYSS FEQGPVIWPT 60 SERVQELIAR FMQLPDVQQT RRMMSQDSFV AKRLENSHSA SKIEARKQGK GDECTDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-26 | M-type_MADS family protein |