PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019157588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 117aa MW: 13494.6 Da PI: 10.4624 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s+r+ ++ kR+ g+ KK +EL vLCda++ +i++ss XP_019157588.1 11 IVNQSKRKASYQKRKRGVVKKLNELTVLCDADAGMIMYSS 50 78************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
MARRRLNLAY IVNQSKRKAS YQKRKRGVVK KLNELTVLCD ADAGMIMYSS FEQGPVIWPT 60 SERVQELIAR FMQLPDVQQT RRMMSQGSFV AERLENWHSA SKIEARKQGK GDECTDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 32 | RKASYQKRKRGVVKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-27 | M-type_MADS family protein |