PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157505.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 727aa MW: 80583.9 Da PI: 6.3205

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	111	135	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ a+tG C+y d+C+F+H+ XP_019157505.1 111 LCPMVAKTGkvsSCPYSDKCRFSHD 135 788889999999************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MDGPTSTEPI IEDPCILEHP PPSEIDGGGG VETQTVHKTP EELVAKAIAP VKREYLRPPP 60 QRHHSDGNSD VTGLQNDDAA EAKSNPLLKE KKSKRQLKRE RHQEQKSHPN LCPMVAKTGK 120 VSSCPYSDKC RFSHDVDAFN AQKPADIEGT CPFLDNDGPC PYGLACRFAG THKDDLPVET 180 LKSNRHCSEL NVLNKETQKL LWKHKVKFTK ANAALKHLGI KSLAKNNKFA NPEEDDQIDT 240 NGSSTIDDNE APADANIKLE SSLLVTGEEG LDDTAVIEDD RPQKKAKSST NETATFVDVN 300 NASNILEKDL PKSHDGDASV GTAVLSAATN IQENNLQRSQ DRDTSAATID PPVAETDKSL 360 KVHPREKKLI DFKEKLYLAP LTTVGNLPFR RVCKVLGADV TCGEMAMCSN LLQGQASEWA 420 LLRRHSSEDF FGVQICGQYP DTVARTVELI EQECSVDFID INMGCPIDIV VSKGAGSFLL 480 TKPMRMKSVI AGATATVDTP ITIKVRTGYF EGKNRIHSLI ADIGNWGATA VTIHGRSRQQ 540 RYSKLADWGY IYQCAQTAPK SLQILGNGDV FSYVDWNKHK NDCPELSTCM IARGALIKPW 600 IFTEIKEQRH WDISSGERLD ILKDYVRFGL QHWGSDSKGL ETTRHFLLEW LSYTCRYIPV 660 GLLDVIPQRI NWRSPAYYGR DDLETLMASD SAADWIRISE MLLGKVPEGF SFAPKHKSNA 720 YDTAENG

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MDGPTSTEPI IEDPCILEHP PPSEIDGGGG VETQTVHKTP EELVAKAIAP VKREYLRPPP  60
QRHHSDGNSD VTGLQNDDAA EAKSNPLLKE KKSKRQLKRE RHQEQKSHPN LCPMVAKTGK  120
VSSCPYSDKC RFSHDVDAFN AQKPADIEGT CPFLDNDGPC PYGLACRFAG THKDDLPVET  180
LKSNRHCSEL NVLNKETQKL LWKHKVKFTK ANAALKHLGI KSLAKNNKFA NPEEDDQIDT  240
NGSSTIDDNE APADANIKLE SSLLVTGEEG LDDTAVIEDD RPQKKAKSST NETATFVDVN  300
NASNILEKDL PKSHDGDASV GTAVLSAATN IQENNLQRSQ DRDTSAATID PPVAETDKSL  360
KVHPREKKLI DFKEKLYLAP LTTVGNLPFR RVCKVLGADV TCGEMAMCSN LLQGQASEWA  420
LLRRHSSEDF FGVQICGQYP DTVARTVELI EQECSVDFID INMGCPIDIV VSKGAGSFLL  480
TKPMRMKSVI AGATATVDTP ITIKVRTGYF EGKNRIHSLI ADIGNWGATA VTIHGRSRQQ  540
RYSKLADWGY IYQCAQTAPK SLQILGNGDV FSYVDWNKHK NDCPELSTCM IARGALIKPW  600
IFTEIKEQRH WDISSGERLD ILKDYVRFGL QHWGSDSKGL ETTRHFLLEW LSYTCRYIPV  660
GLLDVIPQRI NWRSPAYYGR DDLETLMASD SAADWIRISE MLLGKVPEGF SFAPKHKSNA  720
YDTAENG