PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157186.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 729aa MW: 83137.6 Da PI: 8.6912

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	44	140	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA+ GF+vrks++k+ r+g +++r + Cs++g + + + +++err+r ++r++Ckak+ ++k+++g++ v+ +++eH+H+ XP_019157186.1 44 FYMKYARLSGFDVRKSSTKRD-RHGVTYMRYLLCSRQGVKGGGRLErgpecsngKTRERRRRISNRVKCKAKICLRKHSSGEFIVSVFVEEHTHQ 137 9*************98887.8888**********998887789999999**************************************** PP FAR1 89 lap 91 l++ XP_019157186.1 138 LCS 140 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MTTPENDNAG LLDAHPEQWR PAVDDHLVPV VGRQFKTLSE GVLFYMKYAR LSGFDVRKSS 60 TKRDRHGVTY MRYLLCSRQG VKGGGRLERG PECSNGKTRE RRRRISNRVK CKAKICLRKH 120 SSGEFIVSVF VEEHTHQLCS ESSKQFLRLN RGLDVAQQAF LGNCIKANIG GSKSLRLCKE 180 MTGSYANVGA TNVEFQNFRR DLQMYVDVGD GEMIIEKFKI QKEVCNEFFY EYHLDDEGRL 240 ARLFWADPTG RRAFSCYGDI ISFDATYGTN RYSMVFVPFT GVDNHKRCIT FAAGLLTKED 300 VDSYSWLLEK FKCAMGKTPS CVVTDQDPAM RIAIKQVLSE CLHRFCMWHI MTKVNEKLGS 360 ELAKDEKFRT RLNGIVWNER LHTTEFELQW QKLMDDYKLS DHRWFCKLYT ERESWIPAYF 420 ADLPMSGLLR TTSRSEAENG VYGKFTRPHS SLVEFYMQFE SVLEMQRYRQ AKLNAECEGY 480 LPEFKTPLAL ERHVAQLFTI TIFYEIQKEI EAACFYCYVV GIREDGGGIH YDIKGECNTI 540 FTVHHEPNVQ NTSCSCKLFQ RIGLVCRHMF LVFRVAELET LPSKYIMKRW CKHLTCGECS 600 AETSTSGRPA SGAIQLWAEI NACVGLVGNS TEREARMVEV LKGLIMEFAN DGGTMDPITG 660 NRAAIQALCG VQPPQIITIK APAQAKNKGT GKRIKSSREL AIEKSVKIGR KCGICGKYAH 720 HNARSCPLK

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MTTPENDNAG LLDAHPEQWR PAVDDHLVPV VGRQFKTLSE GVLFYMKYAR LSGFDVRKSS  60
TKRDRHGVTY MRYLLCSRQG VKGGGRLERG PECSNGKTRE RRRRISNRVK CKAKICLRKH  120
SSGEFIVSVF VEEHTHQLCS ESSKQFLRLN RGLDVAQQAF LGNCIKANIG GSKSLRLCKE  180
MTGSYANVGA TNVEFQNFRR DLQMYVDVGD GEMIIEKFKI QKEVCNEFFY EYHLDDEGRL  240
ARLFWADPTG RRAFSCYGDI ISFDATYGTN RYSMVFVPFT GVDNHKRCIT FAAGLLTKED  300
VDSYSWLLEK FKCAMGKTPS CVVTDQDPAM RIAIKQVLSE CLHRFCMWHI MTKVNEKLGS  360
ELAKDEKFRT RLNGIVWNER LHTTEFELQW QKLMDDYKLS DHRWFCKLYT ERESWIPAYF  420
ADLPMSGLLR TTSRSEAENG VYGKFTRPHS SLVEFYMQFE SVLEMQRYRQ AKLNAECEGY  480
LPEFKTPLAL ERHVAQLFTI TIFYEIQKEI EAACFYCYVV GIREDGGGIH YDIKGECNTI  540
FTVHHEPNVQ NTSCSCKLFQ RIGLVCRHMF LVFRVAELET LPSKYIMKRW CKHLTCGECS  600
AETSTSGRPA SGAIQLWAEI NACVGLVGNS TEREARMVEV LKGLIMEFAN DGGTMDPITG  660
NRAAIQALCG VQPPQIITIK APAQAKNKGT GKRIKSSREL AIEKSVKIGR KCGICGKYAH  720
HNARSCPLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-87	FAR1 family protein