PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157010.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 257aa MW: 28761.7 Da PI: 6.799

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.5	1.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien nrqvtfskRr g+ KKA ELS+LCdaevavi+fsstgkl+e+ss XP_019157010.1 9 KLIENINNRQVTFSKRRGGLVKKARELSILCDAEVAVIVFSSTGKLFEFSS 59 569**********************************************96 PP
2	K-box	60.9	5e-21	78	171	7	99
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +e++ + ++e++ L +ei++L+++q llG+dL+ + l+eL++Le+qL+++l i+s+K+++l+eq+e+++k+e+ + en +Lrk++e XP_019157010.1 78 MPlVEKKPKQLEHTEVEVLSDEISKLKSKQLLLLGKDLKGMGLNELRELEHQLHEGLVGIKSRKDQILMEQLEHSRKQEELALLENDQLRKEIE 171 44566667777889*****************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MGRGKIDIKL IENINNRQVT FSKRRGGLVK KARELSILCD AEVAVIVFSS TGKLFEFSSK 60 SMEQTLSRYN KRIKSSGMPL VEKKPKQLEH TEVEVLSDEI SKLKSKQLLL LGKDLKGMGL 120 NELRELEHQL HEGLVGIKSR KDQILMEQLE HSRKQEELAL LENDQLRKEI EGFRGFYYPL 180 SATVPAPCIE FYPTENNVSS GKDGVESQDD IGSDGGFENE NSDTTLQLGL ATGGCQKRKT 240 PEPETHSTSS GSHLELK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	5e-59	MIKC_MADS family protein