PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156944.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 800aa MW: 89105.4 Da PI: 5.9609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.2	3.5e-36	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCe+d+se+k yhrrh+vC +++a +v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k+a XP_019156944.1 143 RCQVPGCETDISELKGYHRRHRVCLSCANAVSVVLDGESKRYCQQCGKFHVLLDFDEGKRSCRRKLERHNNRRRRKSA 220 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MENPTAAAPP IESPPQSKNA QMTSAITQLP DDPVATSSLF DWSEFLEFSL DDHLNISFDS 60 SDQQPQQPDI PSPQPPITAA DPGRVRKRDP RMVCSNFLAG RIPCACPELD EQLEEEELAA 120 LGSTGKKKPR TAKASAAGQS IARCQVPGCE TDISELKGYH RRHRVCLSCA NAVSVVLDGE 180 SKRYCQQCGK FHVLLDFDEG KRSCRRKLER HNNRRRRKSA DSKGSAEKEP HQVLVADEGD 240 FDEDSSKDGT GMDSQIIERE LREVLLESEG HLSTLSSTVG SQTVQSDSIR PFAASGEEQS 300 EKEKENLKNA RSPSYCDNRS ALSSVCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLASMPV 360 ELEGYIRPGC TILTLFIAMP HFKWAKLLEE PAIQLRDLML SPGNMLLGRG TFLVYLNNMV 420 FRATKGGTSI TKVKLKGKTP KLYYVHPTCF EAGKPLEFFV CGSNLLQSKF RFLVSFSEKY 480 LANDFRVSPC CKIEGDSSSL DHQLLKVIVP QTNVDLFGPA FIEVENESGL SNFVPILIAD 540 KDICAEMEKM LEKLNRSLHP RGSEFASSCP SCEHSILRDT ELSDFMLDVA WLLREPVVES 600 TQLLTSTLIQ RFRRLLNLLI ENESTSILER ALSNIKIVMD NGSDAGIAES ELNIFCGTMD 660 AAQTFLSQRL IDVRESLVGS CIKDARREMS STQIYKNETR PVIQAINQDV ENNMCKSESR 720 LTFVDDSSTA PLLTMTSVDL KERPWKSCNP SFGKTVLTSR PLVFAITAVA VCFGVCAVAL 780 HPSSVGEFTT TIRRCLFDNS

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MENPTAAAPP IESPPQSKNA QMTSAITQLP DDPVATSSLF DWSEFLEFSL DDHLNISFDS  60
SDQQPQQPDI PSPQPPITAA DPGRVRKRDP RMVCSNFLAG RIPCACPELD EQLEEEELAA  120
LGSTGKKKPR TAKASAAGQS IARCQVPGCE TDISELKGYH RRHRVCLSCA NAVSVVLDGE  180
SKRYCQQCGK FHVLLDFDEG KRSCRRKLER HNNRRRRKSA DSKGSAEKEP HQVLVADEGD  240
FDEDSSKDGT GMDSQIIERE LREVLLESEG HLSTLSSTVG SQTVQSDSIR PFAASGEEQS  300
EKEKENLKNA RSPSYCDNRS ALSSVCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLASMPV  360
ELEGYIRPGC TILTLFIAMP HFKWAKLLEE PAIQLRDLML SPGNMLLGRG TFLVYLNNMV  420
FRATKGGTSI TKVKLKGKTP KLYYVHPTCF EAGKPLEFFV CGSNLLQSKF RFLVSFSEKY  480
LANDFRVSPC CKIEGDSSSL DHQLLKVIVP QTNVDLFGPA FIEVENESGL SNFVPILIAD  540
KDICAEMEKM LEKLNRSLHP RGSEFASSCP SCEHSILRDT ELSDFMLDVA WLLREPVVES  600
TQLLTSTLIQ RFRRLLNLLI ENESTSILER ALSNIKIVMD NGSDAGIAES ELNIFCGTMD  660
AAQTFLSQRL IDVRESLVGS CIKDARREMS STQIYKNETR PVIQAINQDV ENNMCKSESR  720
LTFVDDSSTA PLLTMTSVDL KERPWKSCNP SFGKTVLTSR PLVFAITAVA VCFGVCAVAL  780
HPSSVGEFTT TIRRCLFDNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	217	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein