PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156915.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 645aa MW: 73303.9 Da PI: 7.8911

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.3	1.2e-18	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+g+ t ++ C++ g++++ ++ ++ +r+r+++rtgC+a++ k + ++v+++ + XP_019156915.1 64 EFYNNYAAKVGFDTRSSSLVRA-RDGTKTLKKIFCNRDGFKNTGAQHchsksnadagegPSRPKRRRVSNRTGCRARIIFKYIEVVGYQVMTFIE 157 6***************9998.67778888999****999999999*999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019156915.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MEEFDQVPSD LQSLNNPSLS PSNSSNGYTL TISPGMTQYW TPHCEDKIKP AVDMIFKTLD 60 AGIEFYNNYA AKVGFDTRSS SLVRARDGTK TLKKIFCNRD GFKNTGAQHC HSKSNADAGE 120 GPSRPKRRRV SNRTGCRARI IFKYIEVVGY QVMTFIEKHN HSMSSVLASL YSQIVGDYSK 180 VGATVVDFKN VRRDLRAYIL SADAQILVHN LIKKQEMCLA FAFDYEVDED EQMSILFWAD 240 PMSKKNFAAF GDVVSFDATY STNRYNLAMG MEPRMIVTDQ DPAMKVAIPR VFKQARHRYC 300 MWHIMCKVGE KVGPTLNKNE EFKNKLNSIV WTSSLEPPNF EKQWREFMEN ALKSQRNTYA 360 KLNSDNEGYN PDMKTPLGIE KHTSIVYTIT VFYQVQEEIC VSCFKCMVLS VTEDGGMLHY 420 DIMDGKNKIF TVVHNVNDHD AKCSCKMFEM VGLLCRHIFV VFRDLEKITL KYVVNRWTKD 480 ASLKATFEID GVIYDQNGPK DEKKMLLNKL WSDVHCCIDL AGSNMEQLVA FSQVINEQKQ 540 LLMSGKEKLS PQHNRKTVIE SFCGSTEISE INILPPKHSK NKGSGKRIKS SKELAMEKEK 600 GRSTLKTSLL VLATSDTLPA CHNAQLSALD DVWLQHDELA PENDE

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MEEFDQVPSD LQSLNNPSLS PSNSSNGYTL TISPGMTQYW TPHCEDKIKP AVDMIFKTLD  60
AGIEFYNNYA AKVGFDTRSS SLVRARDGTK TLKKIFCNRD GFKNTGAQHC HSKSNADAGE  120
GPSRPKRRRV SNRTGCRARI IFKYIEVVGY QVMTFIEKHN HSMSSVLASL YSQIVGDYSK  180
VGATVVDFKN VRRDLRAYIL SADAQILVHN LIKKQEMCLA FAFDYEVDED EQMSILFWAD  240
PMSKKNFAAF GDVVSFDATY STNRYNLAMG MEPRMIVTDQ DPAMKVAIPR VFKQARHRYC  300
MWHIMCKVGE KVGPTLNKNE EFKNKLNSIV WTSSLEPPNF EKQWREFMEN ALKSQRNTYA  360
KLNSDNEGYN PDMKTPLGIE KHTSIVYTIT VFYQVQEEIC VSCFKCMVLS VTEDGGMLHY  420
DIMDGKNKIF TVVHNVNDHD AKCSCKMFEM VGLLCRHIFV VFRDLEKITL KYVVNRWTKD  480
ASLKATFEID GVIYDQNGPK DEKKMLLNKL WSDVHCCIDL AGSNMEQLVA FSQVINEQKQ  540
LLMSGKEKLS PQHNRKTVIE SFCGSTEISE INILPPKHSK NKGSGKRIKS SKELAMEKEK  600
GRSTLKTSLL VLATSDTLPA CHNAQLSALD DVWLQHDELA PENDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-29	FAR1 family protein