PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156733.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 657aa    MW: 72530.6 Da    PI: 5.799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.82e-933006565374
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                     ++++Ae + + ++++a+ +Larl+++ sp ++p++R+a+yf+eAL+  l++     + +lpp+  s+ + + ++ a+k+fsevsP+++f ++t N
  XP_019156733.1 300 VYKAAELILNLQFSNAEMILARLNHRLSPMAKPLERAAFYFKEALHLPLTS-----VPSLPPRIPSPVDGVFKMGAYKVFSEVSPLIQFMNFTSN 389
                     6899***********************************************.....7789999999999************************** PP

            GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dlel 191
                     qaIleav+g+e++Hi Dfdi  G+QW +++q+L  R+ + pp l+iT+++sp++++  e++ ++e+L++fA+e+gv+fe +v+  ++++  +  +
  XP_019156733.1 390 QAILEAVDGAECIHIFDFDIAFGAQWSSFMQELPRRNrRAPPWLKITAFASPSTHHPIEINLMHENLTQFANEVGVKFELEVVNFDSFDpsSYPV 484
                     *************************************78899****************************************9666554114467 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     +++r ++ Ea+aVn+ +   + +  +++l+     +L+ +k+lsPkvvv   +  ++++ +F +++l+al+y+ alf+s++a+   + ++ +k+E
  XP_019156733.1 485 SSFRSSESEAIAVNFPVWSVSSH--RATLP----LLLHYIKQLSPKVVVSLARGYERTELPFPHHLLNALQYFEALFESIDAG-NVTPDASNKIE 572
                     8889999********99655554..44444....5*********************************************887.5677999**** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+l++++i+++v    +       ++  Wr+ + +aGF+p p+s++a++qa++++++++ +g++v+++++sl l+W++r+L+s++aWr
  XP_019156733.1 573 RFLFQPSIESIVFGHLRF----PDQMPPWRNLFASAGFQPHPFSNFAETQAECVVKRTETRGFHVQKHHASLALCWQNRELLSATAWR 656
                     ************998887....8999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MIGMQYNSNS LQGKSVVEVS RFGSAISSSL VPPDAAKFKK NGGFASSEPV SVLDTRSPSP  60
STSTSASSSS HGGGGGYKTA SLVAPPIATT TQTMEAKEKC VGELHPAPEW SEGPEKFDLG  120
MEDWECLLAE SGGSDQYLLR WISGDVEDPS LSLKQLLQGG NNPSEIGFGA SDSDNYNGNS  180
QGPNVNFPHS NLAILGSGLS VQELQYEQKP QTFNSPVLTE LQNVVMSPNV FSSPLYGIHQ  240
EQQPPSKRQN SGSRVSEGVF LNPSNGFLDR PPDILSVQPK KEAGFGTENL QEQQAVYDYV  300
YKAAELILNL QFSNAEMILA RLNHRLSPMA KPLERAAFYF KEALHLPLTS VPSLPPRIPS  360
PVDGVFKMGA YKVFSEVSPL IQFMNFTSNQ AILEAVDGAE CIHIFDFDIA FGAQWSSFMQ  420
ELPRRNRRAP PWLKITAFAS PSTHHPIEIN LMHENLTQFA NEVGVKFELE VVNFDSFDPS  480
SYPVSSFRSS ESEAIAVNFP VWSVSSHRAT LPLLLHYIKQ LSPKVVVSLA RGYERTELPF  540
PHHLLNALQY FEALFESIDA GNVTPDASNK IERFLFQPSI ESIVFGHLRF PDQMPPWRNL  600
FASAGFQPHP FSNFAETQAE CVVKRTETRG FHVQKHHASL ALCWQNRELL SATAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-104GRAS family protein