PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156492.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 489aa MW: 54880 Da PI: 7.1619

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.5	1.3e-27	243	297	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++++SHLQkYR++ XP_019156492.1 243 KVKVDWTPELHKKFVQAVEQL-GLDQAIPSRILEMMKVEGLTRHNIASHLQKYRMH 297 5689***************.******************************96 PP
2	Myb_DNA-binding	45.8	1.4e-14	246	295	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I ++m +g+t+ ++ s++qky+ XP_019156492.1 246 VDWTPELHKKFVQAVEQLGLDqaIPSRILEMMKvEGLTRHNIASHLQKYR 295 57***********************************************7 PP
3	Response_reg	30.3	2.1e-11	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 vl+ d++ + + +++ le+ +y +v ++++ eal + k +++ ++ +++++ + +++l+ + +lp i+v+ +++ +++ + XP_019156492.1 20 VLLLDEDSNSAAKMKTKLEEMDY-IVSTFQNENEALLAIASKSveFHVAIVEVNISNsNEVFKFLEIVK----DLPTILVSNVYCLNTMMKCIAL 109 799999999************.***********888889********456666666555....588*9999****** PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga +fl Kp + ++l++ XP_019156492.1 110 GAVEFLQKPLSDDKLRN 126 ************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MLCTANDLLG WKDFPKGLSV LLLDEDSNSA AKMKTKLEEM DYIVSTFQNE NEALLAIASK 60 SVEFHVAIVE VNISNSNEVF KFLEIVKDLP TILVSNVYCL NTMMKCIALG AVEFLQKPLS 120 DDKLRNIWQH VVHKAFNAGG KDVESLKPVK ESLVSMLQLR STKNEEANTV NSDETEQSTS 180 VQENNRDTLS QERESSPEQA GKNGNSTCSE SKDVRANANS ECRDPKKPSG VNSSTGTKAN 240 KKKVKVDWTP ELHKKFVQAV EQLGLDQAIP SRILEMMKVE GLTRHNIASH LQKYRMHRRQ 300 ILPKEDEWRW PLSRDSTQRS CYPRKPVMAI PQYHSAPPVV PAGQFYSAWA HPGSYPGAHV 360 WGSPYHYPGW QPTDDWNWKS NTGVYAQAWG CPVMPPPQGS YPTYPQILQN TSGHHRSGGV 420 QDRYNMLEKT YDFQPAEELI DKVVKEAINN PWLPLPLGLK PPSTDSVLNE LSKQGISTIP 480 PQTNGSDLR

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MLCTANDLLG WKDFPKGLSV LLLDEDSNSA AKMKTKLEEM DYIVSTFQNE NEALLAIASK  60
SVEFHVAIVE VNISNSNEVF KFLEIVKDLP TILVSNVYCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGG KDVESLKPVK ESLVSMLQLR STKNEEANTV NSDETEQSTS  180
VQENNRDTLS QERESSPEQA GKNGNSTCSE SKDVRANANS ECRDPKKPSG VNSSTGTKAN  240
KKKVKVDWTP ELHKKFVQAV EQLGLDQAIP SRILEMMKVE GLTRHNIASH LQKYRMHRRQ  300
ILPKEDEWRW PLSRDSTQRS CYPRKPVMAI PQYHSAPPVV PAGQFYSAWA HPGSYPGAHV  360
WGSPYHYPGW QPTDDWNWKS NTGVYAQAWG CPVMPPPQGS YPTYPQILQN TSGHHRSGGV  420
QDRYNMLEKT YDFQPAEELI DKVVKEAINN PWLPLPLGLK PPSTDSVLNE LSKQGISTIP  480
PQTNGSDLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-128	ARR-B family protein