PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156191.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 535aa MW: 59225 Da PI: 6.7886

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_019156191.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RADSGDFEDY 60 KVSRVRHIPV KNKEARFLKR RQNYDCFETG IAPESSHGFR KSLDEDTSNR SSSGSAVSNS 120 ESSAQFGGTE VSDLTGPAQA NIWDTTVPSR KRTCLGRPKP SSVEKLTKDL YTILHEQQSS 180 YLSGSSEEDL LFESDRPMVS VEIGHGSVLI RHPSSIGREE ESEASSLSVD YKQHSLNESY 240 LRFSNKGANA PNVGSERIKK PTGQGMDQEQ VKRDKDQLET LQILAHHDSP LSYIDLKEIV 300 NFDEFTAHLT IEEQQQLVKY LPIIDTFAPP DSFKGMFESC QFKENLLSFQ KLLVDGVFDN 360 SLSGVKVEDC RTLKRFALCN LTKSKWVEHH NHLEDVKCKN RSKGSEVAGE SEVFGAGFSV 420 NVKRPRDGQH PKLSGANTGM KSPKRATNRF SSGHKETSDS DASCFTPKLL SALPFDYSSV 480 VLDSIGFATE SSDQDLLLDV PSNSSFPEAE LLPVSSFIVQ ASTSSSSVYH HLARP

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RADSGDFEDY  60
KVSRVRHIPV KNKEARFLKR RQNYDCFETG IAPESSHGFR KSLDEDTSNR SSSGSAVSNS  120
ESSAQFGGTE VSDLTGPAQA NIWDTTVPSR KRTCLGRPKP SSVEKLTKDL YTILHEQQSS  180
YLSGSSEEDL LFESDRPMVS VEIGHGSVLI RHPSSIGREE ESEASSLSVD YKQHSLNESY  240
LRFSNKGANA PNVGSERIKK PTGQGMDQEQ VKRDKDQLET LQILAHHDSP LSYIDLKEIV  300
NFDEFTAHLT IEEQQQLVKY LPIIDTFAPP DSFKGMFESC QFKENLLSFQ KLLVDGVFDN  360
SLSGVKVEDC RTLKRFALCN LTKSKWVEHH NHLEDVKCKN RSKGSEVAGE SEVFGAGFSV  420
NVKRPRDGQH PKLSGANTGM KSPKRATNRF SSGHKETSDS DASCFTPKLL SALPFDYSSV  480
VLDSIGFATE SSDQDLLLDV PSNSSFPEAE LLPVSSFIVQ ASTSSSSVYH HLARP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-141	GATA family protein