PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156053.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 320aa MW: 35497.3 Da PI: 8.3467

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6.1e-25	81	125	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_019156053.1 81 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 125 79****************************************986 PP
2	QLQ	67.1	4.2e-23	20	55	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPpeL+++i++ XP_019156053.1 20 PFTAVQWQELEHQAMIYKYLVAGVPVPPELVVPIRR 55 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MSGPSTSVAG EGYGYGYRPP FTAVQWQELE HQAMIYKYLV AGVPVPPELV VPIRRSFEAL 60 SARFFQHQSL NYCSYYGKKF DPEPGRCRRT DGKKWRCSKD AYPDSKYCER HMHRGRNRSR 120 KPVESQSTSQ SLSTAMSHVT TTGSSYGNSG TKLGMEPASY GIENKEFRYP LGMTLNAGEH 180 DFSQETSAGG VRSLGIGSST DSTWGLLPTQ VSSNPMFKTK NEPQFLGGVS ELTIDSSMPK 240 QRQQHCFFGS EIDSPGALKQ EQHSIRPFLS EWPTTTKESW SNLDNDGSNQ NAFSTTQLSI 300 SIPVPPSSFS SRSDCSRNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-51	GRF family protein