PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155942.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 380aa MW: 40445.9 Da PI: 8.9394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F r nL+ H r+H XP_019155942.1 40 FFCDVCGKGFQREQNLQLHRRSH 62 67********************9 PP
2	zf-C2H2	12.6	0.00041	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk + +s+ + H + + XP_019155942.1 118 FGCHRCGKKYAVQSDIRAHAKIC 140 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MDSSSAIAAK KRKPRTPATP GEDTEVIALS PASLTAASRF FCDVCGKGFQ REQNLQLHRR 60 SHNLPWGLKQ RTAAGTAARR RVYVCPAPSC PHHDPSKALG DLSGIKKHFC RKHGEKKFGC 120 HRCGKKYAVQ SDIRAHAKIC GTKTYHCDCG VMFNKWNDFA RHKEYCGLLL AQAIAKTPPV 180 SSLHPPPSLA LSMAASEIEF PASEDGHEET LDASAAGNLI KLKAGDSPST SSAPARQSLM 240 AASKSMASCS DDFFGALMEP TLPLSFLCSP HHLAATNAAS SSQYPSPALS ATALLQKAAQ 300 VGSIYSAGGS FLHGLGLSTM SGFNNNPLQN NGAIMKWNNG YAATPENTTS MVSSGGLPDS 360 MVDQRESPAV IFSPQQPYLI

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MDSSSAIAAK KRKPRTPATP GEDTEVIALS PASLTAASRF FCDVCGKGFQ REQNLQLHRR  60
SHNLPWGLKQ RTAAGTAARR RVYVCPAPSC PHHDPSKALG DLSGIKKHFC RKHGEKKFGC  120
HRCGKKYAVQ SDIRAHAKIC GTKTYHCDCG VMFNKWNDFA RHKEYCGLLL AQAIAKTPPV  180
SSLHPPPSLA LSMAASEIEF PASEDGHEET LDASAAGNLI KLKAGDSPST SSAPARQSLM  240
AASKSMASCS DDFFGALMEP TLPLSFLCSP HHLAATNAAS SSQYPSPALS ATALLQKAAQ  300
VGSIYSAGGS FLHGLGLSTM SGFNNNPLQN NGAIMKWNNG YAATPENTTS MVSSGGLPDS  360
MVDQRESPAV IFSPQQPYLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-79	C2H2 family protein