PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155933.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 296aa    MW: 32492.2 Da    PI: 8.2025
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.5e-1111401543
                    HHHHH.HHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF 15 kRrng.ilKKAeELSvLCdaevaviifsst 43
                     Rr+g ++KKA+ELSvLC+ e+ ++i+s+t
  XP_019155933.1 11 ERRTGaLFKKAKELSVLCGSEIGIVIVSPT 40
                    5666659*********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MRAAVKKHMI ERRTGALFKK AKELSVLCGS EIGIVIVSPT MERSEIIWPA VEAATKMFLA  60
FMEVPEDERV KRMVFHEEYM RGKVNEAIRK MRRVEEEVER KEMNVLMTEV IAGRKSLTEM  120
DTRQLKGLYA LADDKMAELA KREQDLLGVA QNNGAAAAAR SPHRCLRNRR DRNLHRPAAT  180
DAAVSDGLDG GGSYYVPQPP APPFDPRWTT TPPAPAGQLL PNIDPATWFI PNMVAPPPPP  240
LQGGGFGGEG SYQPQMFFPA GGGALPTNNG GGGEGSYQVP AGLNQDWLYT FFPSSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.13e-12M-type_MADS family protein