PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155753.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 450aa MW: 49071.7 Da PI: 7.8937

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.2	1.7e-41	170	245	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h+vC+ hsk+p+v+v g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+ XP_019155753.1 170 CQVEGCNIDLSSAKDYHRKHRVCDSHSKCPKVIVGGIERRFCQQCSRFHSLSEFDENKRSCRRRLSDHNARRRKPP 245 **************************************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MEWNSKWGWE KLAMLGSKAC ESPKKLQLTD WGFVEEAELD TGSLDLSGGG RGGSGGYGSS 60 AKSSVSASTD SSTKDGTKSS NFTFEGFPGD LDKKMEQPGA EVSGNSPPLD TSIGSVEPFI 120 GLKLGKRTYF ESNSGGNSVK SPTMATIPIS SATSVKKTKP SSQCTPTPYC QVEGCNIDLS 180 SAKDYHRKHR VCDSHSKCPK VIVGGIERRF CQQCSRFHSL SEFDENKRSC RRRLSDHNAR 240 RRKPPEDPTQ FDSTNMLSPF PDGRQQMNFV VNHCPIFPSR TAADSTWDSN CTSKFTITRG 300 FTSKPEKART ISKLPNLAGI QLPNASSKGT TPEVFNQGAK QYLVPSNTST TPEVPRALSL 360 LSTTSWGSYQ PESISLDNPL PANQPSSLDP FMHDIPPGLL IPSSDYLQAE QQHSTDFSGH 420 TLAVNSTSAI HLSQVQLFKL PHDTDFYFNI

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MEWNSKWGWE KLAMLGSKAC ESPKKLQLTD WGFVEEAELD TGSLDLSGGG RGGSGGYGSS  60
AKSSVSASTD SSTKDGTKSS NFTFEGFPGD LDKKMEQPGA EVSGNSPPLD TSIGSVEPFI  120
GLKLGKRTYF ESNSGGNSVK SPTMATIPIS SATSVKKTKP SSQCTPTPYC QVEGCNIDLS  180
SAKDYHRKHR VCDSHSKCPK VIVGGIERRF CQQCSRFHSL SEFDENKRSC RRRLSDHNAR  240
RRKPPEDPTQ FDSTNMLSPF PDGRQQMNFV VNHCPIFPSR TAADSTWDSN CTSKFTITRG  300
FTSKPEKART ISKLPNLAGI QLPNASSKGT TPEVFNQGAK QYLVPSNTST TPEVPRALSL  360
LSTTSWGSYQ PESISLDNPL PANQPSSLDP FMHDIPPGLL IPSSDYLQAE QQHSTDFSGH  420
TLAVNSTSAI HLSQVQLFKL PHDTDFYFNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-64	SBP family protein