PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155689.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 464aa    MW: 51538.9 Da    PI: 6.0331
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.71.6e-136504611374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA +v+ g+le+ + +L ++s+la+pdgd+mqR+a yf++ALa r++r+ +++y+al++++ +  + ++ + a+k+f+e++P+ k+++
  XP_019155689.1  50 LIHLLLTCAGHVAGGSLENSNVALDQISHLAAPDGDTMQRIACYFAQALADRVVRTLPGVYRALRCTKLA--SPADDFLARKVFVEMFPFSKVAF 142
                     689****************************************************************998..5899999**************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l+aNqaI ea+ege++vHiiD+++  ++QW aLlq L++Rpegpp+lRiTgv++     ke +e++g+ L++ Ae+l++pf+fn+ ++++le+l+
  XP_019155689.1 143 LVANQAIIEAMEGEKMVHIIDLNAADPTQWRALLQDLSARPEGPPHLRITGVHP----VKEVMEQMGRVLSEEAEKLDIPFQFNA-IVSKLESLD 232
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.............................................desvsleserdevLklvkslsPkvvv 240
                     le+Lrvk+gEala+++ +qlh+ll                                             ++ +s++ +++++L+++++lsPk+++
  XP_019155689.1 233 LEKLRVKTGEALAISSPMQLHTLLaydddkkpsplaskipnrfqitqnslgdfieqdvgngyspsndsaSSYLSTSPKIEAFLSALWGLSPKLMI 327
                     *****************************************************************9986555566668999************** PP

            GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                     ++eq+++hn+++ +er++e+l++y+alfd+le++lpr s er kvE++llg+ei+n++aceg+er+erhe+lekW +r+e++GF++vp+s++a+ 
  XP_019155689.1 328 ITEQDSNHNGHTVMERLSESLYFYAALFDCLESTLPRSSPERLKVEKALLGEEIKNIIACEGTERKERHEKLEKWFKRFESSGFSNVPFSYYAML 422
                     *********************************************************************************************** PP

            GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     qa++ l+ ++ dgy+++ee+g++v +W+drpL+svSaWr
  XP_019155689.1 423 QARRFLQSFGCDGYKMKEENGCVVTCWQDRPLFSVSAWR 461
                     **************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MFQDEGSSSS ITSSSPLQGL AAAAAAAAVS PGSPYPWLKE LKSEERGLYL IHLLLTCAGH  60
VAGGSLENSN VALDQISHLA APDGDTMQRI ACYFAQALAD RVVRTLPGVY RALRCTKLAS  120
PADDFLARKV FVEMFPFSKV AFLVANQAII EAMEGEKMVH IIDLNAADPT QWRALLQDLS  180
ARPEGPPHLR ITGVHPVKEV MEQMGRVLSE EAEKLDIPFQ FNAIVSKLES LDLEKLRVKT  240
GEALAISSPM QLHTLLAYDD DKKPSPLASK IPNRFQITQN SLGDFIEQDV GNGYSPSNDS  300
ASSYLSTSPK IEAFLSALWG LSPKLMIITE QDSNHNGHTV MERLSESLYF YAALFDCLES  360
TLPRSSPERL KVEKALLGEE IKNIIACEGT ERKERHEKLE KWFKRFESSG FSNVPFSYYA  420
MLQARRFLQS FGCDGYKMKE ENGCVVTCWQ DRPLFSVSAW RCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein