PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155546.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 118aa    MW: 14371.9 Da    PI: 11.6678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.6e-151150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s+r+ ++ kR+ g+ KK +EL vLC a++a+i++ss
  XP_019155546.1 11 IVNQSKRKASYQKRKRGLVKKLNELTVLCSADAAMIMYSS 50
                    78************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MARRRLRLAY IVNQSKRKAS YQKRKRGLVK KLNELTVLCS ADAAMIMYSS FEQGPVIWPT  60
VERVQELIAR FMQLPDVQQT RRMMSQDNFV AQWLEKFRRL SEFRRFKRPW LGFKHEYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKASYQKRKRGLVKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.27e-28M-type_MADS family protein