PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155436.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 336aa    MW: 36515.7 Da    PI: 8.2927
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.3e-32196252158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155436.1 196 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 252
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MKCRQFLASS VIGHSEIWFS FSKCIKIMQP NSKTANLVGA NPHNIPHSAD SAEPWWKTAG  60
YNSVPPGMVQ GDASDSSSLE QSLDDQSQSD GGVNPEGDDG TEKSQTSKPS LQEGSCGGQV  120
DKNLQQVASV IPDGSDEHLT QPQQLEFVGH SIACAPNPYI DPYFGQMIAA YGQPLVPPDI  180
LDMHRMRMPL PLEMTQEPVY VNAKQYHGIL RRRESRAKAE LQKKLIKVRK PYLHESRHQH  240
ALRRARGSGG RFVKKSDSNA PKQTGSGGSL SPRSLTLPGP ESFPSGASNN CQEAVPKPHL  300
HQYINSGGSY GSRCCSQESL YHVHSAESSG GGSTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.26e-53NF-YA family protein