PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155395.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 315aa MW: 35698.6 Da PI: 7.2878

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	158	177	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_019155395.1 158 FSCPLCFKTFNRYNNMQMHM 177 89*****************9 PP
2	zf-C2H2	14.6	9.7e-05	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_019155395.1 242 FMCRKCGKAFAVRGDWRTHEKNC 264 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MTDHPYTNYF HGFFNHPNPA NHHFPSSSSS SSTNYTFHSF YNFPPYPQFH PYLQPSSPSS 60 PPLREALPLL SLSPSRAENN NNNDSEGDED VSVDLNLGLP NHSPADLQIS GSGLSSSSHN 120 EEDNNNKMED HSQEGVTLHK GQYWIPTPSQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH 180 GSQYRKGPES LRGTQPTAML RLPCFCCAAG CRNNIDHPRP KPLKDFRTLQ THYKRKHGIK 240 PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC SCGSDFKHKR SLKDHIRAFG DGHTACGIDC 300 FDEEDEAASE IEQDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-122	C2H2 family protein