PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019155334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19453 Da PI: 8.1741 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.6 | 1.4e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_019155334.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019155334.1 109 MAQAE 113 99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MMKESGRKQG ATSPCAACKL LRRRCAQDCV FAPYFPADEP QKFASVHKVF GASNVNKMLQ 60 ELPEHHRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DMLQTQLAMA QAEVVHMRMR 120 QSVSSGGGTA TNSPENMASP PTPYHHHHHH HQTRSHFSMD MVMDQATWGS SHCGYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-73 | LBD family protein |