PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155188.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 688aa    MW: 75513.6 Da    PI: 6.0953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.81.3e-913296873374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++++++Ae + +g+++ aq +Larl+++ sp g+++qR+a+yf+eAL   l+   ++ + +lp++  s+ + + ++ a+k+fse+sPil+f ++t
  XP_019155188.1 329 DQIYKAAELILTGQFSHAQMILARLNHQLSPVGKSLQRAASYFKEALMLPLLM--PGSSVSLPSRVPSPVDFVFKMGAYKVFSEASPILQFMNFT 421
                     57899***********************************************9..5555569999999999************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                      Nqa+lea+  +e vHi Dfdi+ G+QW +++q+L +R++g   l+iT+++sp++++  e++ ++e L++fA+ +gv+fe +v+  ++++  +++
  XP_019155188.1 422 SNQALLEALGDAEYVHIFDFDIGFGAQWSSFMQELPKRNNG--GLKITAFASPSTHHPLEISLMHESLTQFANDVGVKFELEVVNLDTFDPSSYQ 514
                     **************************************998..8***************************************966655544333 PP

            GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                       +++p   E++aVn+ +   +l ++  +     +++L+ +k+lsPk+vv  e+ +++++ +F++++l+al+yy +lf+s+ +ak+  + + ++k
  XP_019155188.1 515 LSSFRPsgSEVVAVNFPI--WSLSNHLSA----LPSLLHYIKQLSPKIVVSLERGCERTELPFAHHILNALKYYEVLFESMgAAKV--TPDMANK 601
                     33333376********98..344333344....456*********************************************66664..77999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er+l++++i+++v  +         ++  Wr  +++aGF pv++s+++++qa++++++ +++g++ve++++slvl+W++r+L+++ aWr
  XP_019155188.1 602 MERFLFQPSIESIVQGRLCF----PDQMPPWRTLFTSAGFLPVAFSNFTETQAECIMKRNQVRGFHVEKRQASLVLCWQRRELLTAMAWR 687
                     **************987776....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MIGMQYNLQG KGVVSEVGRF GSSISASSSV PQDAKLKRDG SFGSNEPISV LDKRRSPSPS  60
TSTSASSSSF GGTAVKDAAA PAAVGDGPKE EWVVGELQPL VPFEKFGLGL EDWECFLSES  120
GGGGSDQSIL RWVSGAEFED PSFSFKHHEI QGNAGLGDAD QTTTGFGALI ASDNYVSSSV  180
IPISGSPFSF NSNIGKFGSN SQDSNLNFTP NNLVPVIPGL SFQEPVVNQT QNPTNRNVFV  240
SQSYSILQEQ LPPPAKRQNL EISSNSQLPE IPLVGMSHGL LLGKQQDFAQ QGMMGSGQKP  300
LLVPKQEEMG NTNLMMPNHQ HQQQQVVYDQ IYKAAELILT GQFSHAQMIL ARLNHQLSPV  360
GKSLQRAASY FKEALMLPLL MPGSSVSLPS RVPSPVDFVF KMGAYKVFSE ASPILQFMNF  420
TSNQALLEAL GDAEYVHIFD FDIGFGAQWS SFMQELPKRN NGGLKITAFA SPSTHHPLEI  480
SLMHESLTQF ANDVGVKFEL EVVNLDTFDP SSYQLSSFRP SGSEVVAVNF PIWSLSNHLS  540
ALPSLLHYIK QLSPKIVVSL ERGCERTELP FAHHILNALK YYEVLFESMG AAKVTPDMAN  600
KMERFLFQPS IESIVQGRLC FPDQMPPWRT LFTSAGFLPV AFSNFTETQA ECIMKRNQVR  660
GFHVEKRQAS LVLCWQRREL LTAMAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-99GRAS family protein