PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155088.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 453aa MW: 50209 Da PI: 7.9506

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	101	125	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ t tCk+Gd+CkF H+ XP_019155088.1 101 GEKDCSHYMLTRTCKFGDSCKFDHP 125 7889********************8 PP
2	zf-CCCH	34.6	3.2e-11	150	176	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rC+F+H++ XP_019155088.1 150 PGEPDCPYYLKTQKCKYGIRCRFNHPK 176 5789*********************96 PP
3	zf-CCCH	40	6.3e-13	195	219	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+++tG Ck+G++CkF+H++ XP_019155088.1 195 EPLCAFYMKTGKCKFGSTCKFHHPK 219 79*********************96 PP
4	zf-CCCH	38.5	2e-12	269	292	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_019155088.1 269 EVDCPFYLKTGSCKYGATCRYNHP 292 689********************9 PP
5	zf-CCCH	42.8	8.4e-14	339	364	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG+Ck+G+rC+F+H+ XP_019155088.1 339 PGQVECDFYMKTGECKFGERCRFHHP 364 5789*********************9 PP
6	zf-CCCH	36.2	1e-11	398	419	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG+Ck+G++CkF H+p XP_019155088.1 398 CPYYMKTGICKFGATCKFDHPP 419 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MLFNRTNNSF SSAGTRIPTA PQLASQSSWS GPPGVDIGPA VADPFLSGLK RPSSEALYHQ 60 TVLGGHSTVG QTESWFSSNP LAKRPRFETA CNLPIYPQRP GEKDCSHYML TRTCKFGDSC 120 KFDHPIWVPE GGIPDWKEVL ITSESLPVRP GEPDCPYYLK TQKCKYGIRC RFNHPKVKDA 180 FENTDVPVLP ERPSEPLCAF YMKTGKCKFG STCKFHHPKD IQIQASAQEN GSTLETGLID 240 NNEMIGDVKQ TVSPAMLHNS KGLPIRLGEV DCPFYLKTGS CKYGATCRYN HPDRYTINPP 300 AAHLNVGVVN PTASLFQTFD PRLTQTMFGF ATTIYPQRPG QVECDFYMKT GECKFGERCR 360 FHHPLDHSLS VTSSMEGEQQ NFKLSLAGLP RREGAIHCPY YMKTGICKFG ATCKFDHPPP 420 GELIGGTSQV TSTSVGEEEG YAKLVEAIQK QQQ

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MLFNRTNNSF SSAGTRIPTA PQLASQSSWS GPPGVDIGPA VADPFLSGLK RPSSEALYHQ  60
TVLGGHSTVG QTESWFSSNP LAKRPRFETA CNLPIYPQRP GEKDCSHYML TRTCKFGDSC  120
KFDHPIWVPE GGIPDWKEVL ITSESLPVRP GEPDCPYYLK TQKCKYGIRC RFNHPKVKDA  180
FENTDVPVLP ERPSEPLCAF YMKTGKCKFG STCKFHHPKD IQIQASAQEN GSTLETGLID  240
NNEMIGDVKQ TVSPAMLHNS KGLPIRLGEV DCPFYLKTGS CKYGATCRYN HPDRYTINPP  300
AAHLNVGVVN PTASLFQTFD PRLTQTMFGF ATTIYPQRPG QVECDFYMKT GECKFGERCR  360
FHHPLDHSLS VTSSMEGEQQ NFKLSLAGLP RREGAIHCPY YMKTGICKFG ATCKFDHPPP  420
GELIGGTSQV TSTSVGEEEG YAKLVEAIQK QQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein