PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019155042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24616.9 Da PI: 7.7071 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+ XP_019155042.1 2 SCNGCRVLRKGCSENCILRTCLqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6*********************9999777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_019155042.1 97 AVETVLR 103 *999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MSCNGCRVLR KGCSENCILR TCLQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALQPI PEFPGSAVAA 120 EVGEASECTD TLKLQDPGQN PRSKVQKRRR LPDGPASVLQ LADLDLSLNP GFQGFHPKGY 180 GNTSPVPEKR RPGTPSMNSE ESVTTTCFDS RFGGAGDQHG GEPKLLSLFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 151 | KRRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-80 | LBD family protein |