PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155015.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 455aa    MW: 50572.7 Da    PI: 6.2712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.32.5e-89554522373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalkl..fsevs 88 
                     ++lL++cA+a++s+d++laq++L+ l+++a+pdgd++qRl+  f++AL ar a   s+++k l++ ++ +         ++++++ +l  f++++
  XP_019155015.1  55 EQLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLTCAFLRALIARAAM--SGTCKLLAAMADLHPGlnlnmmNTHRFSIIELasFVDLT 147
                     79*************************************************998..4444444332222111123344444444444477***** PP

            GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                     P+++f++ +aN aI +aveg + vHi+D++ ++++Q p+L++a+a+Rpegpp +++T  +++e +      ++ee+g +L +fA++ +v ++f+v
  XP_019155015.1 148 PWHRFGFTAANAAIIDAVEGYSVVHIVDLSSTHCMQIPTLIDAIAARPEGPPLIKLTLAAAAEDFppmLDLSYEELGAKLVNFARSRNVALNFTV 242
                     *********************************************************9999888898888999********************** PP

            GRAS 181 l.......vakrledleleeL.rvkp.gEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                     +        ++ +++l+l++L r  +  Eal++n++++lh+++           ++ +  +s r+ +Lk ++sl P+++ +++++ad +s++++ 
  XP_019155015.1 243 VpstpsdgFSSLIQQLRLQNLvRA-EtSEALVINCHMMLHYIPdetlyenshsqSSAAGAASFRTMFLKSIRSLDPTILLLIDEDADFTSNNLVC 336
                     988766655556666677766334.26****************7777766665433344445899****************************** PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                     r+ +a++y +  +d++++ lpr s++r+++E+  + ++++nv+a+eg +r+er e + +W +rl++a F+ vp+s++ ++++k +l +++  g+ 
  XP_019155015.1 337 RLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAN-ICWKVENVIAHEGLQRVERVEPKTRWVQRLRNANFRGVPFSDDGVSEVKNMLDEHA-AGWG 429
                     *********************************.********************************************************.99** PP

            GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                     ++ e+g +vl+Wk++++v+++aW
  XP_019155015.1 430 LKREDGDVVLTWKGHNVVFATAW 452
                     *********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MMQFTETLPA PSSHQISAFS GLVTNKNQVH RTRPWPGFPT SSKNLGTIGD PNCMEQLLVH  60
CANAIESNDA TLAQQILWVL NNIATPDGDS NQRLTCAFLR ALIARAAMSG TCKLLAAMAD  120
LHPGLNLNMM NTHRFSIIEL ASFVDLTPWH RFGFTAANAA IIDAVEGYSV VHIVDLSSTH  180
CMQIPTLIDA IAARPEGPPL IKLTLAAAAE DFPPMLDLSY EELGAKLVNF ARSRNVALNF  240
TVVPSTPSDG FSSLIQQLRL QNLVRAETSE ALVINCHMML HYIPDETLYE NSHSQSSAAG  300
AASFRTMFLK SIRSLDPTIL LLIDEDADFT SNNLVCRLRS AFNYLWIPYD TVDTFLPRGS  360
KQRQWYEANI CWKVENVIAH EGLQRVERVE PKTRWVQRLR NANFRGVPFS DDGVSEVKNM  420
LDEHAAGWGL KREDGDVVLT WKGHNVVFAT AWIPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein