PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155002.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 312aa MW: 35495.5 Da PI: 6.8792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	153	172	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_019155002.1 153 FECPVCFKTFNRYNNMQMHM 172 89*****************9 PP
2	zf-C2H2	14.7	8.6e-05	237	259	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_019155002.1 237 FMCRKCGKAFAVRGDWRTHEKNC 259 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MSDPYTNFHS QHWLKLHHFP PPNTSTTFHY SQTTPPSPPL REALPLLTLG PTRHNQNNGQ 60 EEEEDDEEGV TVALHIGPPN PSASDLQVAA ASRSCSSTDD YKDGHNHGQQ NNSNEDIEDD 120 CGVECLPYMM NKLNKGQYWI PTPSQILIGP TQFECPVCFK TFNRYNNMQM HMWGHGSQYR 180 KGPESLRGTQ PTGMLRLPCY CCAAGCRNNI DHPRSKPLKD FRTLQTHYKR KHGVRPFMCR 240 KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGDGHGA YGDDGFEEEE 300 DPASEIEQDN AW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-137	C2H2 family protein