PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154899.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 435aa    MW: 47445.6 Da    PI: 7.8563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-09112133426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C ++++ G Ck+Gd+C+F H+
  XP_019154899.1 112 KICAYWLQ-GSCKFGDSCRFLHS 133
                     79******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MDIDGSKRIF RRLGPSQGDN GSSKQQQKVC FHWRAGRCDR FPCPFLHREL AAPPPQAQGS  60
LTNGTASSKR SHGYSDDYRG GPRRNTNFNN NWGRTPAHGG GNNARAVTKT EKICAYWLQG  120
SCKFGDSCRF LHSWTTGNCF SLLTTLEGHQ KVVSGIALPS GSDKLYSGSS DKTVRVWDCQ  180
SGQCAGAVNL NGEVGCMLSE GPWIFVGLTN LVKAWNAQTA ADLNLTGPVG QVYSLVVGND  240
MLFAGTKDGI LAWKFNVATN CFEPAASLKG HSHHVVSLVV GANRLYSGSM DNTIRVWSLE  300
TLQCLQILTD HTSVVMSFLC WDQFLLSCSL DKTVKVWVAN ESGNLEVTYT HQEEHGVLAL  360
CGMHDAEAKP VLLCSCNDNT VRVYDLPSFS ERGKIFSKEA IRCIEIGPGG LFFTGDESGQ  420
VRVWKWLAET TTAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein