PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154554.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 270aa MW: 29863 Da PI: 7.6291

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.5e-31	37	139	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q XP_019154554.1 37 SCNGCRVLRKGCSEDCIIRPCLewiknPQSQANATVFLAKFYGRAGLLNLINAGPLNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQN 131 6********************************************************************************************** PP DUF260 91 kaelallk 98 +++++l + XP_019154554.1 132 AVQAVLKG 139 99988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MIFKHLNNVV VPYELKVCLS FLISTTELES GVNMRLSCNG CRVLRKGCSE DCIIRPCLEW 60 IKNPQSQANA TVFLAKFYGR AGLLNLINAG PLNLRPAIFR SLLYEACGRI VNPIYGSVGL 120 LWSGNWQLCQ NAVQAVLKGD PVVPITSATT NNEPPLKFCD IRHVNKDENC AVSTDLHRVR 180 TRCLFKKSRN TRVRVGFSDE EGNRSTTSHE SSLSHQSHME PNLEEASREV ESSAMAAAES 240 SRKEGQAEAG DGEIELELTL GRPRAVSTEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-89	LBD family protein