PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154512.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 694aa MW: 75875.7 Da PI: 6.8154

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_019154512.1 274 PCPDFRK-GACRRGDMCEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MNINHLTVET EDTFSSLLEL AANNDIEGVK RWIGSDPSSI DEVGQWYGRQ KGSKQMVLEH 60 RTPLMVAATY GSIDVLKLIL SLPEIDVNRS CGRDKTTALH CAASGGSRDA LDAMKLLLEA 120 GADPKLADAN GYRPRDVLAV SPKFLATKLG LESLLGSDSI VEQKLSVVTT NSSSNSPPLS 180 PSSGNQSPSS ASDSTSSPKS EKFNASEKKE YPIDPSLPDI KNSIYSTDEF RMFSFKIRPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL 300 HPAQYRTRLC KDGIKCNRRV CFFAHTQDEL RPLYVSTGSA VPSPRGSNTS AANAMDFAAA 360 MGLIPGSPSS VSVMSPSPFT PPMSPSNNGL SNMGWPQQNV PTLHLPGSNF QSSRLRSSLH 420 ARDIPCEQPS NLPDFDVQQK QLLNELSCLS HSLSRSARSK TLAPSNLDDL FSAESSSSGY 480 SDQALAQACF SPTHKSAVLN QFQQQQQSML SPINTNFSPK NTDNSLLQAS FGVQSSGRMS 540 PRIMDPISPL SSRVSLLAQR EKQQQFRSLS SRDLGSNASG PVDFSSDSWS KWGPSEGKPD 600 WAVKSEEFGK LRRSSSFELA NNGEEPDLSW VQSLVKESPQ EMKDKSSPHI AGFGATSAEG 660 SSSNSQIDQI DQSTLNAWLE QMHLDQLMAH LGPI

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MNINHLTVET EDTFSSLLEL AANNDIEGVK RWIGSDPSSI DEVGQWYGRQ KGSKQMVLEH  60
RTPLMVAATY GSIDVLKLIL SLPEIDVNRS CGRDKTTALH CAASGGSRDA LDAMKLLLEA  120
GADPKLADAN GYRPRDVLAV SPKFLATKLG LESLLGSDSI VEQKLSVVTT NSSSNSPPLS  180
PSSGNQSPSS ASDSTSSPKS EKFNASEKKE YPIDPSLPDI KNSIYSTDEF RMFSFKIRPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL  300
HPAQYRTRLC KDGIKCNRRV CFFAHTQDEL RPLYVSTGSA VPSPRGSNTS AANAMDFAAA  360
MGLIPGSPSS VSVMSPSPFT PPMSPSNNGL SNMGWPQQNV PTLHLPGSNF QSSRLRSSLH  420
ARDIPCEQPS NLPDFDVQQK QLLNELSCLS HSLSRSARSK TLAPSNLDDL FSAESSSSGY  480
SDQALAQACF SPTHKSAVLN QFQQQQQSML SPINTNFSPK NTDNSLLQAS FGVQSSGRMS  540
PRIMDPISPL SSRVSLLAQR EKQQQFRSLS SRDLGSNASG PVDFSSDSWS KWGPSEGKPD  600
WAVKSEEFGK LRRSSSFELA NNGEEPDLSW VQSLVKESPQ EMKDKSSPHI AGFGATSAEG  660
SSSNSQIDQI DQSTLNAWLE QMHLDQLMAH LGPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein