PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154087.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 400aa MW: 43292.4 Da PI: 6.5665

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.8	5.5e-36	36	149	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++++ ++s + + +++ ++++++ + XP_019154087.1 36 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKPAIDELAELPAWKPSTVnpNFDQEDAQKQHQETPgdanll 130 79**************************************************************7777766654333333334433333666777 PP TCP 89 ......kaaksaa.kskksq 101 + +k ++ +++++ XP_019154087.1 131 dnvagpS-SKRSMiMQESEN 149 7776532.222221222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MAENRQQQQG SSSRLGLRNA GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLAA 60 HTAIQFYDVQ DRLGYDRPSK AVDWLINKAK PAIDELAELP AWKPSTVNPN FDQEDAQKQH 120 QETPGDANLL DNVAGPSSKR SMIMQESENE SSFLPPSLNS DSIADTIKSF FPMGASEQPI 180 PNSSSMQFQS FAQHSDLLSS QNQDLRLSLQ SFQDPTILLH HQNQQAAQHH QNPASHRAIL 240 TGFDASGWSE HNQHRFPGWH GGGGGDAAAA ASCSASGSGG AAASATGGYL FNSPQQPLFQ 300 QLFGGQNQFF PSQRGPLQSS YSPSVRAWID PSPAIAIASV DPNQQHYQLP IYPSSLSGIG 360 FSTGVGEFSG FRIPARIQGE EEEHDGISDK PSSASSDSRR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MAENRQQQQG SSSRLGLRNA GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLAA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLINKAK PAIDELAELP AWKPSTVNPN FDQEDAQKQH  120
QETPGDANLL DNVAGPSSKR SMIMQESENE SSFLPPSLNS DSIADTIKSF FPMGASEQPI  180
PNSSSMQFQS FAQHSDLLSS QNQDLRLSLQ SFQDPTILLH HQNQQAAQHH QNPASHRAIL  240
TGFDASGWSE HNQHRFPGWH GGGGGDAAAA ASCSASGSGG AAASATGGYL FNSPQQPLFQ  300
QLFGGQNQFF PSQRGPLQSS YSPSVRAWID PSPAIAIASV DPNQQHYQLP IYPSSLSGIG  360
FSTGVGEFSG FRIPARIQGE EEEHDGISDK PSSASSDSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	9e-69	TCP family protein