PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153668.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 402aa MW: 46378.4 Da PI: 7.5283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	55	141	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA +vGFsvr+ k++++ ++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019153668.1 55 DMYNDYAFRVGFSVRRGKQRYNFARKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAYVQFDLHENGMWIVSKHEKLHNHELVP 141 58******************99999***********99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MGPSHSSVIS KSIWQDVAET EHTSDPVGVV DTEDANPTDQ DLVGMSVCSV DEAYDMYNDY 60 AFRVGFSVRR GKQRYNFARK TMKTKMFHCS KDGFKRSTGK GCYSKIDGRT GCGAYVQFDL 120 HENGMWIVSK HEKLHNHELV PPSKSYLLRS HRMVSRNHIS YLTNLKSSGV SVADGVRFLK 180 TQSGGSPLVG FTSRDTYNSL CTDALNRLDG TDSNTLIEIF KRGQSSERDF YFDFEVDLES 240 RLCSFFWRDG RMRRDYDLFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN VMFGCGFLMN 300 EKIESFVWLF KTFLRSMDYK SPQSIMTDQC AAMAAAIVQV FPSSRHRLCI WHIGENSKKH 360 IKGLRNQKDF LDIFNCLLKY TDTEAEFEFY WTRYVYDDGY NI

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MGPSHSSVIS KSIWQDVAET EHTSDPVGVV DTEDANPTDQ DLVGMSVCSV DEAYDMYNDY  60
AFRVGFSVRR GKQRYNFARK TMKTKMFHCS KDGFKRSTGK GCYSKIDGRT GCGAYVQFDL  120
HENGMWIVSK HEKLHNHELV PPSKSYLLRS HRMVSRNHIS YLTNLKSSGV SVADGVRFLK  180
TQSGGSPLVG FTSRDTYNSL CTDALNRLDG TDSNTLIEIF KRGQSSERDF YFDFEVDLES  240
RLCSFFWRDG RMRRDYDLFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN VMFGCGFLMN  300
EKIESFVWLF KTFLRSMDYK SPQSIMTDQC AAMAAAIVQV FPSSRHRLCI WHIGENSKKH  360
IKGLRNQKDF LDIFNCLLKY TDTEAEFEFY WTRYVYDDGY NI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-61	FAR1 family protein