PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153504.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 320aa    MW: 35600.1 Da    PI: 6.7404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.26.9e-33851931100
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k ltpsdv+k++rlv+pk++ae++         gg  e++  l++ede g++W+++++y+++s++yvltkGW++Fvk+++L++gD v+F +++
  XP_019153504.1  85 FEKPLTPSDVGKLNRLVIPKQHAEKYfpltgqepgGGGAEKGLLLSFEDECGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDAVLFARHR 179
                     99****************************9999966677999*************************************************887 PP

                     SSEE..EEEEE-SS CS
              B3  87 rsefelvvkvfrks 100
                      + ++l+++++r+s
  XP_019153504.1 180 ADAERLFIGWRRRS 193
                     79999******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MSVNHFTTEG FWLTKQHHLT VPPSNDTSCN LATTASSSAA IFSAQNTGYS FNLNNKNEDE  60
EEESEEQQSQ EEQQEMTIIP KEHLFEKPLT PSDVGKLNRL VIPKQHAEKY FPLTGQEPGG  120
GGAEKGLLLS FEDECGKTWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLDAG DAVLFARHRA  180
DAERLFIGWR RRSSSSVQDG SNSGAGQAST VGGGGGWAQT WHPYPPPATP AAIPYQPNCL  240
HAGSSAGVVQ RQTGSSGNSK RSVRLFGVNL ECEPEPTTVD RSAQPGQHQP FQYYANSHAS  300
YNHMEMKFSR DVNQMRFEQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-54B3 family protein