PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153412.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 473aa MW: 49952.2 Da PI: 8.9346

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019153412.1 56 FVCEICSKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	12.2	0.00056	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +t+ XP_019153412.1 131 FKCERCSKKYAVRSDWKAHTKTC 153 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEELRNSSSM AAPSEGEPSA QLTVVSKRRR SLPGTPDPDA EVIALSPKSL LATNRFVCEI 60 CSKGFQRDQN LQLHRRGHNL PWTLKQRGGK PKRRVYVCPE TTCVHHHPSR ALGDLTGIKK 120 HFCRKHGEKK FKCERCSKKY AVRSDWKAHT KTCGTKEYRC DCGTIFSRKD SFITHRAFCD 180 ALAQETIRCQ PLEEPSKVAP PPTTTATSSS SPPPPPLTPS TGVLSPVVSV QSADLPENQS 240 GLSHHKKGTL PTVPTTIHTA CAGAGAGVPL FSTSNVNGEA LQSVFASSTV AGDSRPTQLP 300 PAPAPGSAGA SAEPMFLSLS CPIYLSGNAA SSVFPWAAAS QDLHRQYAAP SRPPPALSAT 360 ALLQKAAEIG ATSSHGSFLC GLGLATSSGS NPQDGLTKWN EHVKQENKSI SSPSSPTTMI 420 FTNNPPTLDF LGVGAGATPA SFLGSMNNSG GGGGVASTGD CWDDTSDRKF GFH

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEELRNSSSM AAPSEGEPSA QLTVVSKRRR SLPGTPDPDA EVIALSPKSL LATNRFVCEI  60
CSKGFQRDQN LQLHRRGHNL PWTLKQRGGK PKRRVYVCPE TTCVHHHPSR ALGDLTGIKK  120
HFCRKHGEKK FKCERCSKKY AVRSDWKAHT KTCGTKEYRC DCGTIFSRKD SFITHRAFCD  180
ALAQETIRCQ PLEEPSKVAP PPTTTATSSS SPPPPPLTPS TGVLSPVVSV QSADLPENQS  240
GLSHHKKGTL PTVPTTIHTA CAGAGAGVPL FSTSNVNGEA LQSVFASSTV AGDSRPTQLP  300
PAPAPGSAGA SAEPMFLSLS CPIYLSGNAA SSVFPWAAAS QDLHRQYAAP SRPPPALSAT  360
ALLQKAAEIG ATSSHGSFLC GLGLATSSGS NPQDGLTKWN EHVKQENKSI SSPSSPTTMI  420
FTNNPPTLDF LGVGAGATPA SFLGSMNNSG GGGGVASTGD CWDDTSDRKF GFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein