PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153386.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 342aa MW: 38762.4 Da PI: 6.1467

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	269	304	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_019153386.1 269 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 304 4679*****************************885 PP
2	ELK	38	3.5e-13	224	245	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_019153386.1 224 ELKNHLLRKYSGYLSSLKQELS 245 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MENYNQLGEE AAAAAQRGGT SSFLYCGSVL APPSYGRAGG GGGGGEFHLQ QPYDPIVKTE 60 GGSTSHNHHH QRFESEVEAI KAKIIAHPQY SNLLEAYMDC QKVGAPPEVV ARLAAVRQEF 120 ESRQRASALG GRDISSKDPE LDQFMEAYYD MLVKYREELT RPLQEAMEFM RRIESQLNML 180 SNAPVRVFTS DDKCEGVGSS EDDQDNSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL 240 KQELSKKKKK GKLPKEARQK LLNWWELHYK WPYPSETEKV ALAESTGLDQ KQINNWFINQ 300 RKRHWKPSED MQFMVMDGLH PQNAALYMDG HYMGDGPYRL GP

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MENYNQLGEE AAAAAQRGGT SSFLYCGSVL APPSYGRAGG GGGGGEFHLQ QPYDPIVKTE  60
GGSTSHNHHH QRFESEVEAI KAKIIAHPQY SNLLEAYMDC QKVGAPPEVV ARLAAVRQEF  120
ESRQRASALG GRDISSKDPE LDQFMEAYYD MLVKYREELT RPLQEAMEFM RRIESQLNML  180
SNAPVRVFTS DDKCEGVGSS EDDQDNSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL  240
KQELSKKKKK GKLPKEARQK LLNWWELHYK WPYPSETEKV ALAESTGLDQ KQINNWFINQ  300
RKRHWKPSED MQFMVMDGLH PQNAALYMDG HYMGDGPYRL GP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-144	TALE family protein