PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153362.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 425aa MW: 45737.8 Da PI: 9.3748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.3e-06	185	207	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 CpdCg++F+ ++L++H+ + H XP_019153362.1 185 ACPDCGEVFPKIESLEHHQAVrH 207 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MALLTFLPPE KQQQQQPNTQ KQQQRKRKQH LQNPKKQQPK PAKPPSSWDS FKSLLTCKQV 60 EGSAVHDPSK SGGGGYVLGG PCGSICSFRD VVHGNTSRVV HRADNSPESS SLGQETRLLS 120 KKNGCAANSG SSSRSSLPAP AARSHGGSSY GGSSRAMQFR KLSGCYECHT IVDPSRYPMP 180 RTICACPDCG EVFPKIESLE HHQAVRHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPVCKI 240 ERILKVHNTQ RTIQRFEDCR DAVKIRANAA GKKNPRCAAD GNELLRFYCT TLTCALGARG 300 SSSLCGSLPG CGVCTIIRHG FQGNKVAGIR TTASSGRAHD CPNGGSDGRR AMLVCRVIAG 360 RVRRVVEDTG AGDEEAGPGG LSASAGSYES VAGYGGIYSN LEELYVFNPR AILPCFVVIY 420 KAMES

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MALLTFLPPE KQQQQQPNTQ KQQQRKRKQH LQNPKKQQPK PAKPPSSWDS FKSLLTCKQV  60
EGSAVHDPSK SGGGGYVLGG PCGSICSFRD VVHGNTSRVV HRADNSPESS SLGQETRLLS  120
KKNGCAANSG SSSRSSLPAP AARSHGGSSY GGSSRAMQFR KLSGCYECHT IVDPSRYPMP  180
RTICACPDCG EVFPKIESLE HHQAVRHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPVCKI  240
ERILKVHNTQ RTIQRFEDCR DAVKIRANAA GKKNPRCAAD GNELLRFYCT TLTCALGARG  300
SSSLCGSLPG CGVCTIIRHG FQGNKVAGIR TTASSGRAHD CPNGGSDGRR AMLVCRVIAG  360
RVRRVVEDTG AGDEEAGPGG LSASAGSYES VAGYGGIYSN LEELYVFNPR AILPCFVVIY  420
KAMES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	QRKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-149	C2H2 family protein