PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153081.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 368aa MW: 41184.9 Da PI: 5.014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39	2.4e-12	22	119	14	128
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 +v +L k + g++++ +v++ v+ y+ +P++Lp + wy ++ k + + g+W +g e+++ + +g ++ L f XP_019153081.1 22 IV-LHLDKFMCGSRVPD-TVLDCVNPYQNQPQRLP------PDIWYLVNSTGPK--------ETEDGGFWAVKGDACEIFE-NPDIKGWRTNLEF 99 55.67888888888777.67888888888888888......2346655554443........34569************.9999***** PP NAM 109 ykgrapkgektdWvmheyrl 128 +kgrap g kt+Wvm+ey++ XP_019153081.1 100 FKGRAPYGLKTEWVMQEYSI 119 ****************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MCPAPSPTPL RALGPGCSEK DIVLHLDKFM CGSRVPDTVL DCVNPYQNQP QRLPPDIWYL 60 VNSTGPKETE DGGFWAVKGD ACEIFENPDI KGWRTNLEFF KGRAPYGLKT EWVMQEYSIT 120 RKGAHKDTQK TKSNTVSTRL PEVHRTESLF VESKSDYVSS DDFMELNDLE GDIGQSPETC 180 RVEHPSDQDV LYDGFLELAD LDKDISKSPV VEKPENPLDV DLADTILRGD YLELNDLAEL 240 ASHSSSSANS SHRKSDEFFG LLLDDEKSQD LQAKGSGFHC NYMGSGRPNE VILPPTTSEL 300 MITGTGTNEP QVQTRPTSST KSKSSDKALK DPNVKRPKPE SRNEDSSNAS SSRHRKKKFK 360 KYFCFFPF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MCPAPSPTPL RALGPGCSEK DIVLHLDKFM CGSRVPDTVL DCVNPYQNQP QRLPPDIWYL  60
VNSTGPKETE DGGFWAVKGD ACEIFENPDI KGWRTNLEFF KGRAPYGLKT EWVMQEYSIT  120
RKGAHKDTQK TKSNTVSTRL PEVHRTESLF VESKSDYVSS DDFMELNDLE GDIGQSPETC  180
RVEHPSDQDV LYDGFLELAD LDKDISKSPV VEKPENPLDV DLADTILRGD YLELNDLAEL  240
ASHSSSSANS SHRKSDEFFG LLLDDEKSQD LQAKGSGFHC NYMGSGRPNE VILPPTTSEL  300
MITGTGTNEP QVQTRPTSST KSKSSDKALK DPNVKRPKPE SRNEDSSNAS SSRHRKKKFK  360
KYFCFFPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	1e-10	NAC family protein