PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152823.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 230aa MW: 25914.8 Da PI: 6.4271

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.5	6.5e-29	148	206	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YY+C +gC+vkkk+er+ ed +++++tYeg Hnhe XP_019152823.1 148 LDDGYKWRKYGKKMVKSNTNPRHYYKCVNEGCNVKKKIERDPEDLDYLITTYEGIHNHE 206 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MMSDSDFLQA NINPPSKDHP TFNHDSFDNL PSIIEDYHRH YYPISEVSSY ISYVNHFLND 60 ESPAPPPNST GHRGFGSSSL SPPSAAVVTQ ERSCTTTTTG SSCSSFDGMP PTSSPSSQMI 120 GCSSNEMRRK SKEEQTIVFR TKTELPVLDD GYKWRKYGKK MVKSNTNPRH YYKCVNEGCN 180 VKKKIERDPE DLDYLITTYE GIHNHESPFV CLLPEDVASL CHPSSFTLHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-33	WRKY family protein