PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152639.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 546aa MW: 59764.1 Da PI: 7.049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.8e-17	254	303	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P + ++K +Ka+ L +++eYI+ Lq XP_019152639.1 254 RSKHSATEQRRRSKINDRFQMLRDIIPLS----DQKRDKASFLLEVIEYIQFLQ 303 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQAGGFL RTHDFLQPLE QAENTVGKEE 60 SKVEVTIAEK PPPPPSMEHN LPGGIGTYSI SYLQRVPKPE GSLFTMAQPS STDRNDENSN 120 CSSYSGSGFT LWDESAVKKG KTGKENSSGE RHVLRGVNTG GQRPVAMEWP SQSSSNLKHS 180 TAAFSSFSSS QQLAAQNNQS FLNMITSAKS AQEEDEEEDE EEFVIKKEPS PHPKGNLSVK 240 TVGKSNDQKP NTPRSKHSAT EQRRRSKIND RFQMLRDIIP LSDQKRDKAS FLLEVIEYIQ 300 FLQEKVQKHE GSYQSWEHEP TKFPWNNCQR GAQGFIDHSQ GTNNASDPAL IFASKFADSK 360 PGISRTIPVN GQKAEPDMST ALIKDGGHPQ PMSLPFDPNI FPLCGTRNIA SQPLPKLVSG 420 KDKSTSQHQP QFPQSRSNTS NYTVASNEPK EQDPTIESGT ISISSIYSQG LLSTLTTALQ 480 SSGVDLSQAS ISVHIDLGKR ANGRLNSSAS TIKGDDVSTS NQPIPHSIVT SAGEESSQAL 540 KRIKTS

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQAGGFL RTHDFLQPLE QAENTVGKEE  60
SKVEVTIAEK PPPPPSMEHN LPGGIGTYSI SYLQRVPKPE GSLFTMAQPS STDRNDENSN  120
CSSYSGSGFT LWDESAVKKG KTGKENSSGE RHVLRGVNTG GQRPVAMEWP SQSSSNLKHS  180
TAAFSSFSSS QQLAAQNNQS FLNMITSAKS AQEEDEEEDE EEFVIKKEPS PHPKGNLSVK  240
TVGKSNDQKP NTPRSKHSAT EQRRRSKIND RFQMLRDIIP LSDQKRDKAS FLLEVIEYIQ  300
FLQEKVQKHE GSYQSWEHEP TKFPWNNCQR GAQGFIDHSQ GTNNASDPAL IFASKFADSK  360
PGISRTIPVN GQKAEPDMST ALIKDGGHPQ PMSLPFDPNI FPLCGTRNIA SQPLPKLVSG  420
KDKSTSQHQP QFPQSRSNTS NYTVASNEPK EQDPTIESGT ISISSIYSQG LLSTLTTALQ  480
SSGVDLSQAS ISVHIDLGKR ANGRLNSSAS TIKGDDVSTS NQPIPHSIVT SAGEESSQAL  540
KRIKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	7e-83	bHLH family protein