PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152636.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 548aa MW: 59994.3 Da PI: 6.8957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.8e-17	256	305	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P + ++K +Ka+ L +++eYI+ Lq XP_019152636.1 256 RSKHSATEQRRRSKINDRFQMLRDIIPLS----DQKRDKASFLLEVIEYIQFLQ 305 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQAGGFL RTHDFLQPLE QAENTVGKEE 60 SKVEVTIAEK PPPPPSMEHN LPGGIGTYSI SYLQRVPKPE GSLFTMAQPS STDRNDENSN 120 CSSYSGSGFT LWDESAVKKG KTGKENSSGE RHVLRETGVN TGGQRPVAME WPSQSSSNLK 180 HSTAAFSSFS SSQQLAAQNN QSFLNMITSA KSAQEEDEEE DEEEFVIKKE PSPHPKGNLS 240 VKTVGKSNDQ KPNTPRSKHS ATEQRRRSKI NDRFQMLRDI IPLSDQKRDK ASFLLEVIEY 300 IQFLQEKVQK HEGSYQSWEH EPTKFPWNNC QRGAQGFIDH SQGTNNASDP ALIFASKFAD 360 SKPGISRTIP VNGQKAEPDM STALIKDGGH PQPMSLPFDP NIFPLCGTRN IASQPLPKLV 420 SGKDKSTSQH QPQFPQSRSN TSNYTVASNE PKEQDPTIES GTISISSIYS QGLLSTLTTA 480 LQSSGVDLSQ ASISVHIDLG KRANGRLNSS ASTIKGDDVS TSNQPIPHSI VTSAGEESSQ 540 ALKRIKTS

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQAGGFL RTHDFLQPLE QAENTVGKEE  60
SKVEVTIAEK PPPPPSMEHN LPGGIGTYSI SYLQRVPKPE GSLFTMAQPS STDRNDENSN  120
CSSYSGSGFT LWDESAVKKG KTGKENSSGE RHVLRETGVN TGGQRPVAME WPSQSSSNLK  180
HSTAAFSSFS SSQQLAAQNN QSFLNMITSA KSAQEEDEEE DEEEFVIKKE PSPHPKGNLS  240
VKTVGKSNDQ KPNTPRSKHS ATEQRRRSKI NDRFQMLRDI IPLSDQKRDK ASFLLEVIEY  300
IQFLQEKVQK HEGSYQSWEH EPTKFPWNNC QRGAQGFIDH SQGTNNASDP ALIFASKFAD  360
SKPGISRTIP VNGQKAEPDM STALIKDGGH PQPMSLPFDP NIFPLCGTRN IASQPLPKLV  420
SGKDKSTSQH QPQFPQSRSN TSNYTVASNE PKEQDPTIES GTISISSIYS QGLLSTLTTA  480
LQSSGVDLSQ ASISVHIDLG KRANGRLNSS ASTIKGDDVS TSNQPIPHSI VTSAGEESSQ  540
ALKRIKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	6e-84	bHLH family protein