PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152624.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 332aa    MW: 37673.7 Da    PI: 5.2682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.7e-30958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng+lKKA+ELSvLCd++vavi+fs++g+l +++
  XP_019152624.1  9 KRIENNTNRQVTFSKRRNGLLKKAYELSVLCDVDVAVIMFSPSGRLSTFA 58
                    79**********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGRVKLQIKR IENNTNRQVT FSKRRNGLLK KAYELSVLCD VDVAVIMFSP SGRLSTFAGS  60
TKSMEDIIMR FVNLPEQERG RLQNQEYLRR VLEKLKNESS DHAAAISPVN GANDSQITEI  120
QRKLEQCQSR LGEVEQQLLV YECDPGEIMT LYEAQCRERI FEQNLNLVRQ RKQILEEKFN  180
PIPDTQAPSE QLNLGLETTM NTIDFALVDN WLPADKDPHS QIFNFLPNGF FPHRDETGPV  240
HQPMVAPPPL PLLHVENVPL GDHRVTSRAE DDMPRPGDLF GPIIDVNVSP WTQYGGAPAA  300
NVPLPSTYPR DRAILEAWIA QFSTPSLNQD HI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-49MIKC_MADS family protein