PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152600.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 952aa    MW: 105750 Da    PI: 6.7198
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24194295199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++ +r++++r++lt+GW+ Fv+a++L +gD v+F   +++
  XP_019152600.1 194 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIAKDLHGNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WNE 284
                     99*****************************8544444..48************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_019152600.1 285 NNQLLLGIRRA 295
                     8889****997 PP
2Auxin_resp120.21.6e-39320403183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+s+Fv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_019152600.1 320 AAHAAATNSRFTIFYNPRASPSDFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 403
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    
MRICFFAVWV GGGFVGEGTT SRFITFLLPF TFIFFWVFAF CFNKFVGFVV GTRSSSLAAQ  60
SFPGMRVSLA GVNPQAEEGT GEKKCLNSEL WHACAGPLVS LPPLGSRVVY FPQGHSEQVT  120
ASTNKEIDAH IPSYPGLPAQ LICQLHNVTM HADNETDEVY AQMTLQPLSA QEQKDVCLLP  180
AELGMPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDYSQQPP AQELIAKDLH  240
GNEWKFRHVF RGQPKRHLLT TGWSVFVSAK RLVAGDAVIF IWNENNQLLL GIRRANRPQT  300
VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SDFVIPLAKY AKAVYHTRVS  360
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL  420
WEIEPLTTFP MYPSPFSLRL KRPWPSGLPS FPGLSNGDMH ISSPLSWLRG NMGDQGIQSL  480
NFQGYGITPF MQPRLDASML GLQPDIYQTM ATLDSSKLAS QQSLLQFQQS IPSSSSSLIQ  540
SQMLQRPHPQ QNLLQSFQEN QVISQAQILQ QQLQRQQSYN EQQQQQLHPP PIQQFQEQQQ  600
MSKPITSLPR MNSTTQSQLS HFQALSSTVP QQSFSDLVGN HVMTSNNSST QSLPRSFSHD  660
EASQLLNMHE TNPLATLPSK RIALESQVSS RATPYVVSQA DMISPNSKVS DLPTFLPPFP  720
GKEFPEYQGV AYSQGNNALL GVNTDSSILL QNGISNLKNS GGENGFLNMP FSTCNFTSGV  780
GTDYPLNPDM GTSSCVDESG FLQSSENVDQ ANPPNRTFVK VHKSGSFGRS LDISKFSSYH  840
ELRSELARMF GLEGLLEDPE RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPFE  900
VHQMGKEEGI DLPNNLPAAN QRLPNGGSSC EVHVSQKETR NMNGIPLGSL DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein