PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019152482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24465.5 Da PI: 8.3942 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145 | 2.2e-45 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ XP_019152482.1 10 PCAACKFLRRKCQPECVFAPYFPPDQPQKFASVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS 104 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_019152482.1 105 CAKSE 109 99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MASSSSSNSP CAACKFLRRK CQPECVFAPY FPPDQPQKFA SVHKVFGASN VTKLLNELQP 60 HQREDAVNSL AYEADMRLRD PVYGCVGVIS LLQHQLRQLQ MDLSCAKSEL SKYQSHLGVG 120 STTHNLIAAA AAAAAAHHHH HQQQNNLGFN LMGGGAGGGG SAGAREHHQH QFFPRDQQQP 180 YLINNYEPSS LLAMNMNVSA SIGPLSQFQP PRAAGADGRR TPVEPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 5e-78 | LBD family protein |