PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152366.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 474aa MW: 52246.9 Da PI: 8.0212

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	92	111	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ XP_019152366.1 92 VCKECGKGFQSWKALFGHMK 111 6******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEQQQGDQEM LQQKHFCKLC SRSFPCGRSL GGHMRSHLIG NSSENAERSR NSGSGIDTSY 60 VLRENPRKTC KFSAEFNGGG GEDALLQSLD KVCKECGKGF QSWKALFGHM KCHSEKIMMI 120 STNNNKRSKM EEAADSWNVV ADNNNNSHSD DNNAPNRKKR SRRASANTKR YQVVNAATTN 180 SSTLTAANSA SPCVSENEHE EVAMSLIMLS RDVGSWGGLA SVTECSDNNS EFLGIRSSGN 240 SEIKAKKVKA DEKLKKPKSR GSGIPISGGN KMKVSEADRA GFEKSEVDVP SNAQNEVWFS 300 SLDSEKKIRF ECSTCNKSFH SYQALGGHRA SHKKAKDGSD KNTDHYSGAQ NQTTADSSEH 360 SILGFADKVE SSSKKIKVAH HECPICFKIF PSGQALGGHK RSHLIAEAKA NQQPTQIMQK 420 PSVPETRDFL DLNLPAPIEE EEEEDKESHQ SSGFQAWWMV GSSYNHDHLM QPTF

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEQQQGDQEM LQQKHFCKLC SRSFPCGRSL GGHMRSHLIG NSSENAERSR NSGSGIDTSY  60
VLRENPRKTC KFSAEFNGGG GEDALLQSLD KVCKECGKGF QSWKALFGHM KCHSEKIMMI  120
STNNNKRSKM EEAADSWNVV ADNNNNSHSD DNNAPNRKKR SRRASANTKR YQVVNAATTN  180
SSTLTAANSA SPCVSENEHE EVAMSLIMLS RDVGSWGGLA SVTECSDNNS EFLGIRSSGN  240
SEIKAKKVKA DEKLKKPKSR GSGIPISGGN KMKVSEADRA GFEKSEVDVP SNAQNEVWFS  300
SLDSEKKIRF ECSTCNKSFH SYQALGGHRA SHKKAKDGSD KNTDHYSGAQ NQTTADSSEH  360
SILGFADKVE SSSKKIKVAH HECPICFKIF PSGQALGGHK RSHLIAEAKA NQQPTQIMQK  420
PSVPETRDFL DLNLPAPIEE EEEEDKESHQ SSGFQAWWMV GSSYNHDHLM QPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-25	C2H2 family protein