PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152195.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 777aa MW: 86265.3 Da PI: 6.6982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.8e-08	83	125	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a + G++ +++I ++++ + q++++++ + XP_019152195.1 83 AWTREEEESFFSALRHVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 125 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MELQLTLGSE ADHYLRSSPR KDGDFTFGKV NCVEQQIASS QEHAIPEQAM FSQDHSVTEQ 60 LASFEEHSAL QQPVKRQTRK WAAWTREEEE SFFSALRHVG KNFEKITSRV QSKNKDQVRH 120 YYYRLVRRMN KLLGPELCLN AKNSRDTNAA MLRWWSLLEK YSCKASKLHL KPRRFKIFIE 180 TLENQLLKDR KKNVRRCFSQ GENTSTAPIS VSNQGRGASG HDGRSVKVVL LDNQDIHKFG 240 SGKGSSLKRH INIGANSTSC KADSSLLKTA RHRRKIGATA AYKRWEKAAI AGVSLVADAA 300 EHLERTTTDK EDGHFQDSNV RNVFEHSGKD PHVFPDLLHN SFNETNLQNS GKLKLQLFPV 360 DDGTRRALEL DNHNPYLELT LSTRKKMSSV LEHLNRKWGN SSMACGDLML FPYHLHKENL 420 VHFQKWTKDT TLTAADVYAL TGSPPVFRLR YGWFSNAEVA FRAPVSSAIP SRHDANMNIM 480 PESSVGVLQA PSTDPPKEAN GCVSMNTVNA SRSSDHTEAV LWENPETVVT EAEVDDLQFN 540 KAGTSCVGEW ADSLTNISVG DLLSEAPDME DANCITSSIH SSSNYIHQIP FSCDSFDAAI 600 AAHIKKHQNV TDSQAALPSQ LSSIWGAEDT CDAFAFQRHS LSEKVQNASK HTSLETCKQI 660 TLANTTALGA SVEDLPGARN PVDGDAATAD LESVHYSPTS DVVKDFNGLS DVYWPDSLGP 720 LDLDIPSSRY HSELILSDSL GGLTQLIASS LDAFQNCSFF GADKKEPVST TEAQEPL

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MELQLTLGSE ADHYLRSSPR KDGDFTFGKV NCVEQQIASS QEHAIPEQAM FSQDHSVTEQ  60
LASFEEHSAL QQPVKRQTRK WAAWTREEEE SFFSALRHVG KNFEKITSRV QSKNKDQVRH  120
YYYRLVRRMN KLLGPELCLN AKNSRDTNAA MLRWWSLLEK YSCKASKLHL KPRRFKIFIE  180
TLENQLLKDR KKNVRRCFSQ GENTSTAPIS VSNQGRGASG HDGRSVKVVL LDNQDIHKFG  240
SGKGSSLKRH INIGANSTSC KADSSLLKTA RHRRKIGATA AYKRWEKAAI AGVSLVADAA  300
EHLERTTTDK EDGHFQDSNV RNVFEHSGKD PHVFPDLLHN SFNETNLQNS GKLKLQLFPV  360
DDGTRRALEL DNHNPYLELT LSTRKKMSSV LEHLNRKWGN SSMACGDLML FPYHLHKENL  420
VHFQKWTKDT TLTAADVYAL TGSPPVFRLR YGWFSNAEVA FRAPVSSAIP SRHDANMNIM  480
PESSVGVLQA PSTDPPKEAN GCVSMNTVNA SRSSDHTEAV LWENPETVVT EAEVDDLQFN  540
KAGTSCVGEW ADSLTNISVG DLLSEAPDME DANCITSSIH SSSNYIHQIP FSCDSFDAAI  600
AAHIKKHQNV TDSQAALPSQ LSSIWGAEDT CDAFAFQRHS LSEKVQNASK HTSLETCKQI  660
TLANTTALGA SVEDLPGARN PVDGDAATAD LESVHYSPTS DVVKDFNGLS DVYWPDSLGP  720
LDLDIPSSRY HSELILSDSL GGLTQLIASS LDAFQNCSFF GADKKEPVST TEAQEPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	0.0	MYB_related family protein