PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152113.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 292aa    MW: 30879.8 Da    PI: 9.5011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-063861225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_019152113.1 38 KSKPCTKFFSTSGCQFGESCHFLH 61
                    7789******************** PP
2zf-CCCH25.32.6e-08103128227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC  +     Ck+Gd+C+FaHg+
  XP_019152113.1 103 KTRLCTKYNSAEGCKFGDKCHFAHGE 128
                     8***********************96 PP
3zf-CCCH36.86.5e-12259283126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++f + G C +GdrC+FaHg
  XP_019152113.1 259 YKTKLCDNFVK-GSCTFGDRCHFAHG 283
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEFGGARKRG RFDAGLNGNG GYKKSRQESE YSSGIGSKSK PCTKFFSTSG CQFGESCHFL  60
HYVPGGLKSV TQMLGNNPAL PVATRNSMAM PSFPDAPSPT GVKTRLCTKY NSAEGCKFGD  120
KCHFAHGEWE LGRSALPAHE DPRGMGHASR FGRPEPSQAG LGAAASFGSS ATAKISIDAS  180
LSGAIIGKGG VNSKQICRVT GAKLSIRDNE SDPNLKNIEL EGTIDQIQQA SQMVRELIAT  240
VSSNAKSMKG PRSAPANNYK TKLCDNFVKG SCTFGDRCHF AHGAEELRGG GM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-79C3H family protein