PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151897.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 324aa    MW: 35953.9 Da    PI: 6.6461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-163784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ll d++++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_019151897.1 37 RGPWTPAEDKLLTDYINKEGEGQWRTLPKMAGLLRCGKSCRLRWMNYL 84
                     89******************************99************97 PP
2Myb_DNA-binding513.4e-1690135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_019151897.1  90 RGHITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135
                      6778******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MRTQSSTSSE KGAAGASPPA KAKGKQTPCC SKVGLKRGPW TPAEDKLLTD YINKEGEGQW  60
RTLPKMAGLL RCGKSCRLRW MNYLRPTVKR GHITPDEEDL ILRLHRLLGN RWSLIAGRIP  120
GRTDNEIKNY WNTHLTKKLI SQGIDPRNHK PLLINPTNNH PKSHTSSSSV PIIKPTPIHV  180
GLSNQDKTVK MNSSTTVNVV GGTANHQNDQ IDQPNSVGGT TTDHQTTGNG DEGFNMDIGD  240
DNEDNVGMDF CPDEDAFSTF FDSLMNEDVF FAAAQNNQQS NHHDITPLPS TSENNNNNQP  300
LNPFQHMNFP FSTEGWVDDD DFLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-78MYB family protein