PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151865.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30763.1 Da    PI: 5.3296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.5e-131456850
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     r+  + +R + i+KKA EL +LC+ ++ v+i+s++gkl  ++
  XP_019151865.1 14 ARKLCYKRRAACIIKKAIELQILCGLKIGVVILSPDGKLESWP 56
                    5788899999********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MAETSTPTQT QEKARKLCYK RRAACIIKKA IELQILCGLK IGVVILSPDG KLESWPPELN  60
DVKVLLDAGK ERTRVKSEKR KGDNPETSHR EILVSKLQLL NKRVEFFKGK EIASTSQGGE  120
TLVRSKKRKE FGEEGCLEVL NSKLQLLKKR EMMFLNPSPN SSASAEGKEI DLFDDLDLDL  180
GGEDDDFFFN LVADPQNNAG KDKEIEQQNS FTAAEECGEE VQVRKKARLQ QYPIAPLNNN  240
LPLLTPHPAA DYWETLFTNV VNSTDAMLSL LQDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-09M-type_MADS family protein