PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151610.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 629aa MW: 70690.9 Da PI: 7.0915

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.8e-23	135	235	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvlt sd++++g +++ +k+a+e+ + +++ s++l+ d++g +W++k+i+r++++r++lt+GW++Fv++++L +gD+++F + ++ XP_019151610.1 135 FCKVLTASDTSTHGGFSVLRKHATEClppldlN-QQTPSQDLVALDLHGIEWRFKHIFRGQPRRHLLTTGWSNFVSSKRLVAGDSFLFL--RGEN 226 99**************************964.3445679********************************************..4499 PP E..EEEEE- CS B3 90 felvvkvfr 98 +el+v+++ XP_019151610.1 227 GELRVGIRH 235 99**986 PP
2	Auxin_resp	99.1	6.1e-33	261	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk+ F v Y+Pr s+F+v ++k+++a+++ +svGmRfkm+fe eds+err++Gt+vgv+d+++ +W++S WrsLk XP_019151610.1 261 ASHAVTTKTLFVVNYKPRL--SQFIVGMRKYQEAVHQGFSVGMRFKMRFEVEDSPERRFMGTIVGVEDIST-QWKGSDWRSLK 340 789*************7..9******************************************666.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MATRGSLSSQ QQQSYISAPG QDDHLYEELW KLCAGPLVDV PRNHDRVYYF PQGHMEQLVA 60 STNEELDQKT SMFSLSPKIL CQVVNIKLQV EPETDEVYAQ ITLLPEDEME HTNIDSYSRE 120 TSSSHEPSRP KVYSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDLNQQT PSQDLVALDL 180 HGIEWRFKHI FRGQPRRHLL TTGWSNFVSS KRLVAGDSFL FLRGENGELR VGIRHHAQKQ 240 NSIPSSVISS RNMHLGVLAT ASHAVTTKTL FVVNYKPRLS QFIVGMRKYQ EAVHQGFSVG 300 MRFKMRFEVE DSPERRFMGT IVGVEDISTQ WKGSDWRSLK VHWDEPVPIT RPDRVSPWDI 360 EPFVPSIPSS LALPVAPKNK RPRQVLETTV LEPTLSTAST VWNPSLDSLQ ANSSPRGQRV 420 VECAWPSHVK PNASNHVPAH TVEQKGNLIT RLGDKRKSDA APPCRLFGID LNSTSGGLSI 480 EISKTPSFGD SEQKSDLSID TKALKQELSQ VTQPKEGQTN QNSSIRSRTK VQMQGVAVGR 540 AVDLTAIKGY DELISELEDM FEIHGELRPR KKWEIVFTDD EGDTMLMGDH PWLEFCSVVR 600 RILICSNTEV KKTSSVTESI TVNDRNSPF

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MATRGSLSSQ QQQSYISAPG QDDHLYEELW KLCAGPLVDV PRNHDRVYYF PQGHMEQLVA  60
STNEELDQKT SMFSLSPKIL CQVVNIKLQV EPETDEVYAQ ITLLPEDEME HTNIDSYSRE  120
TSSSHEPSRP KVYSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDLNQQT PSQDLVALDL  180
HGIEWRFKHI FRGQPRRHLL TTGWSNFVSS KRLVAGDSFL FLRGENGELR VGIRHHAQKQ  240
NSIPSSVISS RNMHLGVLAT ASHAVTTKTL FVVNYKPRLS QFIVGMRKYQ EAVHQGFSVG  300
MRFKMRFEVE DSPERRFMGT IVGVEDISTQ WKGSDWRSLK VHWDEPVPIT RPDRVSPWDI  360
EPFVPSIPSS LALPVAPKNK RPRQVLETTV LEPTLSTAST VWNPSLDSLQ ANSSPRGQRV  420
VECAWPSHVK PNASNHVPAH TVEQKGNLIT RLGDKRKSDA APPCRLFGID LNSTSGGLSI  480
EISKTPSFGD SEQKSDLSID TKALKQELSQ VTQPKEGQTN QNSSIRSRTK VQMQGVAVGR  540
AVDLTAIKGY DELISELEDM FEIHGELRPR KKWEIVFTDD EGDTMLMGDH PWLEFCSVVR  600
RILICSNTEV KKTSSVTESI TVNDRNSPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein