PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151313.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 375aa MW: 43002.8 Da PI: 6.6639

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112	4.2e-35	64	155	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk+y++++d++++ +isw+ ++ sfvv+d+++++++vLpkyFkh+nf+SF+RQLn+Y F+k+++++ weF+++ F+kgk++ll++ XP_019151313.1 64 FLKKTYDMVDDPNTDPVISWTPTKASFVVWDPHRLSTDVLPKYFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQKGKRHLLKS 149 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+k+ XP_019151313.1 150 IKRRKH 155 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEVQVQHMIS DGEAIAVKEE PMVFLVEDDA FGIPGVIGGG GDGEMMGSVP RPLEGLREIG 60 PPPFLKKTYD MVDDPNTDPV ISWTPTKASF VVWDPHRLST DVLPKYFKHN NFSSFIRQLN 120 TYRFRKIDSD RWEFANEGFQ KGKRHLLKSI KRRKHHHHHH HPQEAGMGNK WVDSCNEAQA 180 ELCKLRNDQN LLKMEIMRLK QQQETTDNHL AMVRERLEST ETRHKYIVFF VVKAFRNPFF 240 IQHLTEKMRQ RTALNGGGAR VAKKRRLVAP ETITNAAAAD AKNLKGQEEL VMLHSEIQTL 300 FSSDDSSSPV QDQKVKTPPV AASPEMNSEN FILWEKLVED DMIYENETEA DTAKHQSAIV 360 HELEDLIARP PEWGY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEVQVQHMIS DGEAIAVKEE PMVFLVEDDA FGIPGVIGGG GDGEMMGSVP RPLEGLREIG  60
PPPFLKKTYD MVDDPNTDPV ISWTPTKASF VVWDPHRLST DVLPKYFKHN NFSSFIRQLN  120
TYRFRKIDSD RWEFANEGFQ KGKRHLLKSI KRRKHHHHHH HPQEAGMGNK WVDSCNEAQA  180
ELCKLRNDQN LLKMEIMRLK QQQETTDNHL AMVRERLEST ETRHKYIVFF VVKAFRNPFF  240
IQHLTEKMRQ RTALNGGGAR VAKKRRLVAP ETITNAAAAD AKNLKGQEEL VMLHSEIQTL  300
FSSDDSSSPV QDQKVKTPPV AASPEMNSEN FILWEKLVED DMIYENETEA DTAKHQSAIV  360
HELEDLIARP PEWGY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	LKSIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-73	HSF family protein