PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151180.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 786aa    MW: 88391.3 Da    PI: 5.7988
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.69.6e-1174117831374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cAeav ++d ++a ++L++l++++s++gd mqRla+yf+ +L+ar+a+s++++ykal +++ts    ++ l+a++lf  ++P+ k+s+
  XP_019151180.1 411 LRTLLTLCAEAVVADDRRNAGEFLKQLRQHSSQTGDGMQRLAHYFADGLEARMAGSGTQIYKALITKPTS---AADILKAYQLFLAICPFRKISN 502
                     5789****************************************************************99...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpeg.ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +  N++I++ +++++ vH+iDf+i +G+QWp+++q L+ sR++g pp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfefn+ +ak++
  XP_019151180.1 503 FFSNKTIMNLAQSATSVHVIDFGILYGFQWPCFIQRLSsSRRGGlPPKLRITGIDLPQPGfrPAERVEETGKRLANYAERFNVPFEFNA-IAKKW 596
                     *************************************9777755488************9*****************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     e++++e++++++gE+l+Vn+ ++l +llde+v ++s+rd vLkl+++l+P+v++    +  +ns+ F +rf eal ++s+lfd+l++++pr+ +e
  XP_019151180.1 597 ETIKIEDIKINKGEVLVVNCLFRLRNLLDETVVVNSPRDIVLKLIRELNPHVFIQGIVNGAYNSPFFITRFREALFHFSSLFDMLDTNVPRNIHE 691
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri +E+ ++g+e++nv+ace+aer+er et+++W+ r ++aGF p+pl+++++k  +   + +++d + ++e+ ++l++gWk+r ++++S+Wr
  XP_019151180.1 692 RILIEKTIFGQEAKNVIACETAERVERPETYKQWHVRNMRAGFLPLPLNKEIMKMSRDRAKVYNKD-FVIDEDGEWLLQGWKGRIVYALSSWR 783
                     ***********************************************************9999966.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    
MVMERNVRVI CEASGDKLKG KTQSVFLDPN LFNCLNISET LADLNGITSS LCDEGLPNFL  60
DPTVIDQNRC IENLYGESIS KFSDPVLIEN SRVEQSFPDP ILVGSLNVSQ TCLDRNELAE  120
NLNGQAVSDF LDPVLIENLR ISQTSVNQNG LTGVLNDDGP SVMDLHLINN SLGVCEDLLD  180
RNQFAFPPLQ SDPKLNVVAP SNEDFDFNDG DLNYIGQMLM EENMEEKVCM FQESTALQDT  240
ERSFYEAIGE KYPPPAAHYT VSNSNQNGIL VDGNYEAISR LSYSTSSSSG TVNDGHVDSP  300
VSTLRIPEFC NSKELPVDYS GKKRSAEKNE VEVNMEKNYE GRSNKQSAVS SDSTLKPEVF  360
DMVLLCSGGK NESALRQALQ IVSRKNDDSK ASNGKKSRRK KPRGKRETVD LRTLLTLCAE  420
AVVADDRRNA GEFLKQLRQH SSQTGDGMQR LAHYFADGLE ARMAGSGTQI YKALITKPTS  480
AADILKAYQL FLAICPFRKI SNFFSNKTIM NLAQSATSVH VIDFGILYGF QWPCFIQRLS  540
SSRRGGLPPK LRITGIDLPQ PGFRPAERVE ETGKRLANYA ERFNVPFEFN AIAKKWETIK  600
IEDIKINKGE VLVVNCLFRL RNLLDETVVV NSPRDIVLKL IRELNPHVFI QGIVNGAYNS  660
PFFITRFREA LFHFSSLFDM LDTNVPRNIH ERILIEKTIF GQEAKNVIAC ETAERVERPE  720
TYKQWHVRNM RAGFLPLPLN KEIMKMSRDR AKVYNKDFVI DEDGEWLLQG WKGRIVYALS  780
SWRSAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein