PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150817.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 371aa MW: 41849.3 Da PI: 6.69

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.9e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C +G+rC++ H+ XP_019150817.1 34 ICTYYQK-GICAFGSRCRYEHV 54 7****.*********997 PP
2	zf-CCCH	17.7	6.5e-06	101	122	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C +G++C+ +Hg XP_019150817.1 101 SICS-FAAAGNCLRGEKCSQIHG 122 6788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MPKGVPCKFF AQRGCLKGEH CEFLHELRTP PNNICTYYQK GICAFGSRCR YEHVKTSQLQ 60 SSASSFSGHT KPTWNQKLGP QDSLQSDGIA EAKIHNPADQ SICSFAAAGN CLRGEKCSQI 120 HGDLCPTCGK QCLHPFKPQD REEHLKACKK RQWHLEILKH SQEIECSVCL ERVLSKPTEA 180 ERKFGILSEC DHPFCVVCIR NWRSSSPSSG LDVNSALRAC PICRKRSYFV IPSVIWYNTK 240 EEKQEIIDSY KAKLRTIDCK HFDFGNGTCP FGTSCFYKHT VKPGSMMWNR ALMPDSFGSR 300 FPDMDEVGPS SDTDVDGLAN LFEHLYLPHR PGGLQEQEDS SDEELYEFAE AMSFLLCLHG 360 SDTSDFSSDE E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MPKGVPCKFF AQRGCLKGEH CEFLHELRTP PNNICTYYQK GICAFGSRCR YEHVKTSQLQ  60
SSASSFSGHT KPTWNQKLGP QDSLQSDGIA EAKIHNPADQ SICSFAAAGN CLRGEKCSQI  120
HGDLCPTCGK QCLHPFKPQD REEHLKACKK RQWHLEILKH SQEIECSVCL ERVLSKPTEA  180
ERKFGILSEC DHPFCVVCIR NWRSSSPSSG LDVNSALRAC PICRKRSYFV IPSVIWYNTK  240
EEKQEIIDSY KAKLRTIDCK HFDFGNGTCP FGTSCFYKHT VKPGSMMWNR ALMPDSFGSR  300
FPDMDEVGPS SDTDVDGLAN LFEHLYLPHR PGGLQEQEDS SDEELYEFAE AMSFLLCLHG  360
SDTSDFSSDE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-127	C3H family protein