PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150808.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 388aa MW: 43750.5 Da PI: 6.7245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	51	71	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C +G+rC++ H+ XP_019150808.1 51 ICTYYQK-GICAFGSRCRYEHV 71 7****.*********997 PP
2	zf-CCCH	17.6	6.9e-06	118	139	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C +G++C+ +Hg XP_019150808.1 118 SICS-FAAAGNCLRGEKCSQIHG 139 6788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGCFLANFSL TAHVCVYNVS RVPCKFFAQR GCLKGEHCEF LHELRTPPNN ICTYYQKGIC 60 AFGSRCRYEH VKTSQLQSSA SSFSGHTKPT WNQKLGPQDS LQSDGIAEAK IHNPADQSIC 120 SFAAAGNCLR GEKCSQIHGD LCPTCGKQCL HPFKPQDREE HLKACKKRQW HLEILKHSQE 180 IECSVCLERV LSKPTEAERK FGILSECDHP FCVVCIRNWR SSSPSSGLDV NSALRACPIC 240 RKRSYFVIPS VIWYNTKEEK QEIIDSYKAK LRTIDCKHFD FGNGTCPFGT SCFYKHTVKP 300 GSMMWNRALM PDSFGSRFPD MDEVGPSSDT DVDGLANLFE HLYLPHRPGG LQEQEDSSDE 360 ELYEFAEAMS FLLCLHGSDT SDFSSDEE

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGCFLANFSL TAHVCVYNVS RVPCKFFAQR GCLKGEHCEF LHELRTPPNN ICTYYQKGIC  60
AFGSRCRYEH VKTSQLQSSA SSFSGHTKPT WNQKLGPQDS LQSDGIAEAK IHNPADQSIC  120
SFAAAGNCLR GEKCSQIHGD LCPTCGKQCL HPFKPQDREE HLKACKKRQW HLEILKHSQE  180
IECSVCLERV LSKPTEAERK FGILSECDHP FCVVCIRNWR SSSPSSGLDV NSALRACPIC  240
RKRSYFVIPS VIWYNTKEEK QEIIDSYKAK LRTIDCKHFD FGNGTCPFGT SCFYKHTVKP  300
GSMMWNRALM PDSFGSRFPD MDEVGPSSDT DVDGLANLFE HLYLPHRPGG LQEQEDSSDE  360
ELYEFAEAMS FLLCLHGSDT SDFSSDEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-128	C3H family protein